KEGG   PATHWAY: ley03430
Entry
ley03430                    Pathway                                
Name
Mismatch repair - Leclercia sp. W6
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ley03430  Mismatch repair
ley03430

Other DBs
GO: 0006298
Organism
Leclercia sp. W6 [GN:ley]
Gene
DVA43_23375  mutS; DNA mismatch repair protein MutS [KO:K03555]
DVA43_15705  DNA mismatch repair endonuclease MutL [KO:K03572]
DVA43_22990  DNA mismatch repair endonuclease MutH [KO:K03573]
DVA43_18930  DNA helicase II [KO:K03657] [EC:5.6.2.4]
DVA43_02940  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
DVA43_00635  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
DVA43_12775  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
DVA43_03745  exodeoxyribonuclease X [KO:K10857] [EC:3.1.11.-]
DVA43_22790  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
DVA43_16240  single-stranded DNA-binding protein SSB1 [KO:K03111]
DVA43_13575  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
DVA43_17865  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
DVA43_12495  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
DVA43_11610  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
DVA43_09050  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
DVA43_13410  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
DVA43_03755  DNA polymerase III subunit theta [KO:K02345] [EC:2.7.7.7]
DVA43_07015  hypothetical protein [KO:K02345] [EC:2.7.7.7]
DVA43_20620  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
DVA43_14585  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
DVA43_01210  NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
DVA43_17135  NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
DVA43_00065  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
DVA43_17500  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
DVA43_19825  adenine-specific DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
DVA43_21330  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
DVA43_21585  DNA adenine methylase [KO:K06223] [EC:2.1.1.72]
DVA43_24075  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
LinkDB

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