KEGG   PATHWAY: lgi00020
Entry
lgi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lottia gigantea (owl limpet)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lgi00020  Citrate cycle (TCA cycle)
lgi00020

Module
lgi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lgi00020]
lgi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lgi00020]
lgi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lgi00020]
lgi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lgi00020]
Other DBs
GO: 0006099
Organism
Lottia gigantea (owl limpet) [GN:lgi]
Gene
LOTGIDRAFT_170380  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LOTGIDRAFT_201946  hypothetical protein [KO:K01648] [EC:2.3.3.8]
LOTGIDRAFT_181349  hypothetical protein [KO:K01681] [EC:4.2.1.3]
LOTGIDRAFT_196362  hypothetical protein [KO:K01681] [EC:4.2.1.3]
LOTGIDRAFT_220933  hypothetical protein [KO:K00031] [EC:1.1.1.42]
LOTGIDRAFT_208961  hypothetical protein [KO:K00031] [EC:1.1.1.42]
LOTGIDRAFT_142111  hypothetical protein [KO:K00030] [EC:1.1.1.41]
LOTGIDRAFT_158944  hypothetical protein [KO:K00030] [EC:1.1.1.41]
LOTGIDRAFT_192884  hypothetical protein [KO:K00030] [EC:1.1.1.41]
LOTGIDRAFT_228933  hypothetical protein [KO:K00164] [EC:1.2.4.2]
LOTGIDRAFT_174449  hypothetical protein [KO:K00164] [EC:1.2.4.2]
LOTGIDRAFT_177527  hypothetical protein [KO:K00658] [EC:2.3.1.61]
LOTGIDRAFT_154916  hypothetical protein [KO:K00658] [EC:2.3.1.61]
LOTGIDRAFT_219043  hypothetical protein [KO:K00382] [EC:1.8.1.4]
LOTGIDRAFT_218036  hypothetical protein [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LOTGIDRAFT_203895  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LOTGIDRAFT_200562  hypothetical protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LOTGIDRAFT_221335  hypothetical protein [KO:K00234] [EC:1.3.5.1]
LOTGIDRAFT_160203  hypothetical protein [KO:K00235] [EC:1.3.5.1]
LOTGIDRAFT_209250  hypothetical protein [KO:K00236]
LOTGIDRAFT_115222  hypothetical protein [KO:K00237]
LOTGIDRAFT_123266  hypothetical protein [KO:K01676] [EC:4.2.1.2]
LOTGIDRAFT_110879  hypothetical protein [KO:K01679] [EC:4.2.1.2]
LOTGIDRAFT_188534  hypothetical protein [KO:K00025] [EC:1.1.1.37]
LOTGIDRAFT_225558  hypothetical protein [KO:K00026] [EC:1.1.1.37]
LOTGIDRAFT_232430  hypothetical protein [KO:K01958] [EC:6.4.1.1]
LOTGIDRAFT_203707  hypothetical protein [KO:K01596] [EC:4.1.1.32]
LOTGIDRAFT_178121  hypothetical protein [KO:K01596] [EC:4.1.1.32]
LOTGIDRAFT_201812  hypothetical protein [KO:K00161] [EC:1.2.4.1]
LOTGIDRAFT_226825  hypothetical protein [KO:K00162] [EC:1.2.4.1]
LOTGIDRAFT_137484  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lgi00010  Glycolysis / Gluconeogenesis
lgi00053  Ascorbate and aldarate metabolism
lgi00061  Fatty acid biosynthesis
lgi00062  Fatty acid elongation
lgi00071  Fatty acid degradation
lgi00190  Oxidative phosphorylation
lgi00220  Arginine biosynthesis
lgi00250  Alanine, aspartate and glutamate metabolism
lgi00280  Valine, leucine and isoleucine degradation
lgi00350  Tyrosine metabolism
lgi00470  D-Amino acid metabolism
lgi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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