KEGG   PATHWAY: lht00020
Entry
lht00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptopilina heterotoma
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lht00020  Citrate cycle (TCA cycle)
lht00020

Module
lht_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lht00020]
lht_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lht00020]
lht_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lht00020]
Other DBs
GO: 0006099
Organism
Leptopilina heterotoma [GN:lht]
Gene
122497849  probable citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
122503956  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
122498903  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
122504756  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
122501640  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
122498803  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
122506155  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
122509152  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
122504925  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
122498443  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
122497844  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
122499594  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
122503194  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122505665  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
122506794  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122506795  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
122504880  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
122512571  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
122511680  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
122507776  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
122502844  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
122511337  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122503773  probable malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
122510638  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
122507778  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
122511258  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
122502784  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
122504747  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
122508189  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
122510906  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lht00010  Glycolysis / Gluconeogenesis
lht00053  Ascorbate and aldarate metabolism
lht00061  Fatty acid biosynthesis
lht00062  Fatty acid elongation
lht00071  Fatty acid degradation
lht00190  Oxidative phosphorylation
lht00220  Arginine biosynthesis
lht00250  Alanine, aspartate and glutamate metabolism
lht00280  Valine, leucine and isoleucine degradation
lht00350  Tyrosine metabolism
lht00470  D-Amino acid metabolism
lht00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system