KEGG   PATHWAY: lhu00020
Entry
lhu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Linepithema humile (Argentine ant)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lhu00020  Citrate cycle (TCA cycle)
lhu00020

Module
lhu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lhu00020]
lhu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lhu00020]
lhu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lhu00020]
lhu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lhu00020]
lhu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lhu00020]
Other DBs
GO: 0006099
Organism
Linepithema humile (Argentine ant) [GN:lhu]
Gene
105673478  probable citrate synthase 1, mitochondrial [KO:K01647] [EC:2.3.3.1]
105668941  kdn; probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
105675266  ATPCL; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
105672541  cytoplasmic aconitate hydratase isoform X1 [KO:K01681] [EC:4.2.1.3]
105673818  aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
105670311  Idh; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
105668819  Idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
105679133  Idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
105678292  Idh3a; probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
105668325  Ogdh; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
105677959  2-oxoglutarate dehydrogenase complex component E1-like isoform X1 [KO:K00164] [EC:1.2.4.2]
105676001  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
105667640  dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
105677571  Scsalpha1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
105667718  ScsbetaG; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105679623  uncharacterized protein [KO:K01900] [EC:6.2.1.4 6.2.1.5]
105675706  SdhA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
105675674  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
105668392  uncharacterized protein [KO:K00235] [EC:1.3.5.1]
105675560  SdhB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
105669430  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
105677497  SdhD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
105671475  probable fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
105671860  Mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
105679079  Mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
105679341  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
105667713  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
105669907  PCB; pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
105667920  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
105679856  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
105667497  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
105675422  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
105674247  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
105669637  muc; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
105674260  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lhu00010  Glycolysis / Gluconeogenesis
lhu00053  Ascorbate and aldarate metabolism
lhu00061  Fatty acid biosynthesis
lhu00062  Fatty acid elongation
lhu00071  Fatty acid degradation
lhu00190  Oxidative phosphorylation
lhu00220  Arginine biosynthesis
lhu00250  Alanine, aspartate and glutamate metabolism
lhu00280  Valine, leucine and isoleucine degradation
lhu00350  Tyrosine metabolism
lhu00470  D-Amino acid metabolism
lhu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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