KEGG   PATHWAY: lie00020
Entry
lie00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira interrogans serovar Lai IPAV
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lie00020  Citrate cycle (TCA cycle)
lie00020

Module
lie_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lie00020]
lie_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lie00020]
lie_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lie00020]
lie_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lie00020]
lie_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lie00020]
Other DBs
GO: 0006099
Organism
Leptospira interrogans serovar Lai IPAV [GN:lie]
Gene
LIF_A0645  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LIF_A0546  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LIF_B261  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LIF_A3324  leuB; isocitrate/isopropylmalate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LIF_A3240  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LIF_A0993  sucA; alpha-ketoglutarate decarboxylase [KO:K00164] [EC:1.2.4.2]
LIF_A0991  aceF; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
LIF_A2351  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LIF_A0992  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LIF_A0892  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
LIF_A0893  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
LIF_A1523  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LIF_A1522  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LIF_A1524  succinate:quinone oxidoreductase (SQR)-like protein [KO:K00241]
LIF_A0159  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LIF_A1738  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LIF_A0216  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LIF_A1625  acoA; pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
LIF_A1624  acoB; pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
LIF_A1623  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lie00010  Glycolysis / Gluconeogenesis
lie00053  Ascorbate and aldarate metabolism
lie00061  Fatty acid biosynthesis
lie00071  Fatty acid degradation
lie00190  Oxidative phosphorylation
lie00220  Arginine biosynthesis
lie00250  Alanine, aspartate and glutamate metabolism
lie00280  Valine, leucine and isoleucine degradation
lie00350  Tyrosine metabolism
lie00470  D-Amino acid metabolism
lie00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system