KEGG   PATHWAY: limn00010
Entry
limn00010                   Pathway                                
Name
Glycolysis / Gluconeogenesis - Limnobacter sp. SAORIC-580
Description
Glycolysis is the process of converting glucose into pyruvate and generating small amounts of ATP (energy) and NADH (reducing power). It is a central pathway that produces important precursor metabolites: six-carbon compounds of glucose-6P and fructose-6P and three-carbon compounds of glycerone-P, glyceraldehyde-3P, glycerate-3P, phosphoenolpyruvate, and pyruvate [MD:M00001]. Acetyl-CoA, another important precursor metabolite, is produced by oxidative decarboxylation of pyruvate [MD:M00307]. When the enzyme genes of this pathway are examined in completely sequenced genomes, the reaction steps of three-carbon compounds from glycerone-P to pyruvate form a conserved core module [MD:M00002], which is found in almost all organisms and which sometimes contains operon structures in bacterial genomes. Gluconeogenesis is a synthesis pathway of glucose from noncarbohydrate precursors. It is essentially a reversal of glycolysis with minor variations of alternative paths [MD:M00003].
Class
Metabolism; Carbohydrate metabolism
Pathway map
limn00010  Glycolysis / Gluconeogenesis
limn00010

Module
limn_M00002  Glycolysis, core module involving three-carbon compounds [PATH:limn00010]
limn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:limn00010]
limn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:limn00010]
Other DBs
GO: 0006096 0006094
Organism
Limnobacter sp. SAORIC-580 [GN:limn]
Gene
HKT17_04125  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
HKT17_11430  class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
HKT17_11650  fructose-bisphosphate aldolase class II [KO:K01624] [EC:4.1.2.13]
HKT17_05835  triose-phosphate isomerase [KO:K01803] [EC:5.3.1.1]
HKT17_11675  gap; type I glyceraldehyde-3-phosphate dehydrogenase [KO:K00134] [EC:1.2.1.12]
HKT17_11660  phosphoglycerate kinase [KO:K00927] [EC:2.7.2.3]
HKT17_14455  gpmA; 2,3-diphosphoglycerate-dependent phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
HKT17_11850  histidine phosphatase family protein [KO:K15634] [EC:5.4.2.11]
HKT17_05955  eno; phosphopyruvate hydratase [KO:K01689] [EC:4.2.1.11]
HKT17_11655  pyk; pyruvate kinase [KO:K00873] [EC:2.7.1.40]
HKT17_07765  ppsA; phosphoenolpyruvate synthase [KO:K01007] [EC:2.7.9.2]
HKT17_06370  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HKT17_06375  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HKT17_06380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HKT17_09110  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HKT17_11210  S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [KO:K00121] [EC:1.1.1.284 1.1.1.1]
HKT17_09890  NAD(P)-dependent alcohol dehydrogenase [KO:K12957] [EC:1.1.1.2 1.1.1.183]
HKT17_04220  PQQ-binding-like beta-propeller repeat protein [KO:K00114] [EC:1.1.2.8]
HKT17_04265  PQQ-dependent methanol/ethanol family dehydrogenase [KO:K00114] [EC:1.1.2.8]
HKT17_04245  aldehyde dehydrogenase family protein [KO:K00138] [EC:1.2.1.-]
HKT17_10680  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
HKT17_02875  phosphomannomutase/phosphoglucomutase [KO:K15778] [EC:5.4.2.8 5.4.2.2]
HKT17_15395  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00031  D-Glucose
C00033  Acetate
C00036  Oxaloacetate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00084  Acetaldehyde
C00085  D-Fructose 6-phosphate
C00103  D-Glucose 1-phosphate
C00111  Glycerone phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00186  (S)-Lactate
C00197  3-Phospho-D-glycerate
C00221  beta-D-Glucose
C00236  3-Phospho-D-glyceroyl phosphate
C00267  alpha-D-Glucose
C00354  D-Fructose 1,6-bisphosphate
C00469  Ethanol
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C01159  2,3-Bisphospho-D-glycerate
C01172  beta-D-Glucose 6-phosphate
C01451  Salicin
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C06186  Arbutin
C06187  Arbutin 6-phosphate
C06188  Salicin 6-phosphate
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
limn00020  Citrate cycle (TCA cycle)
limn00030  Pentose phosphate pathway
limn00500  Starch and sucrose metabolism
limn00620  Pyruvate metabolism
limn00640  Propanoate metabolism
limn00710  Carbon fixation by Calvin cycle
KO pathway
ko00010   
LinkDB

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