KEGG   PATHWAY: lkb00020
Entry
lkb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira kobayashii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lkb00020  Citrate cycle (TCA cycle)
lkb00020

Module
lkb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lkb00020]
lkb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lkb00020]
lkb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lkb00020]
lkb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lkb00020]
lkb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lkb00020]
Other DBs
GO: 0006099
Organism
Leptospira kobayashii [GN:lkb]
Gene
LPTSP3_g28820  gltA_2; citrate synthase [KO:K01647] [EC:2.3.3.1]
LPTSP3_g10280  gltA_1; citrate synthase [KO:K01647] [EC:2.3.3.1]
LPTSP3_g36390  acn; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LPTSP3_g05660  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
LPTSP3_g10400  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LPTSP3_g10420  aceF_1; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
LPTSP3_g05410  lpd_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPTSP3_g10410  lpd_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LPTSP3_g21820  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
LPTSP3_g21810  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
LPTSP3_g27040  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
LPTSP3_g18190  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LPTSP3_g18180  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LPTSP3_g18200  hypothetical protein [KO:K00241]
LPTSP3_g32860  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
LPTSP3_g10990  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LPTSP3_g11610  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LPTSP3_g04720  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
LPTSP3_g19670  acoA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LPTSP3_g19680  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
LPTSP3_g19690  aceF_2; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lkb00010  Glycolysis / Gluconeogenesis
lkb00053  Ascorbate and aldarate metabolism
lkb00061  Fatty acid biosynthesis
lkb00071  Fatty acid degradation
lkb00190  Oxidative phosphorylation
lkb00220  Arginine biosynthesis
lkb00250  Alanine, aspartate and glutamate metabolism
lkb00280  Valine, leucine and isoleucine degradation
lkb00350  Tyrosine metabolism
lkb00470  D-Amino acid metabolism
lkb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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