KEGG   PATHWAY: lmac00020
Entry
lmac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Lysinibacillus macroides
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmac00020  Citrate cycle (TCA cycle)
lmac00020

Module
lmac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lmac00020]
lmac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lmac00020]
lmac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmac00020]
lmac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lmac00020]
lmac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmac00020]
Other DBs
GO: 0006099
Organism
Lysinibacillus macroides [GN:lmac]
Gene
I6G82_03105  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
I6G82_08170  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
I6G82_03110  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
I6G82_07545  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I6G82_07550  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
I6G82_14215  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6G82_05560  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
I6G82_12935  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
I6G82_12930  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
I6G82_13415  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
I6G82_13420  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
I6G82_21610  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
I6G82_00450  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
I6G82_03430  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I6G82_03435  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
I6G82_03425  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
I6G82_23330  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
I6G82_09080  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
I6G82_09120  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6G82_10415  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6G82_03115  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I6G82_19290  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
I6G82_14060  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
I6G82_01925  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
I6G82_14230  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
I6G82_14225  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
I6G82_14220  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmac00010  Glycolysis / Gluconeogenesis
lmac00061  Fatty acid biosynthesis
lmac00062  Fatty acid elongation
lmac00071  Fatty acid degradation
lmac00190  Oxidative phosphorylation
lmac00220  Arginine biosynthesis
lmac00250  Alanine, aspartate and glutamate metabolism
lmac00280  Valine, leucine and isoleucine degradation
lmac00350  Tyrosine metabolism
lmac00470  D-Amino acid metabolism
lmac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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