KEGG   PATHWAY: lmay00020
Entry
lmay00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira mayottensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmay00020  Citrate cycle (TCA cycle)
lmay00020

Module
lmay_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lmay00020]
lmay_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lmay00020]
lmay_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmay00020]
lmay_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lmay00020]
lmay_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmay00020]
Other DBs
GO: 0006099
Organism
Leptospira mayottensis [GN:lmay]
Gene
DPV73_08110  citrate synthase [KO:K01647] [EC:2.3.3.1]
DPV73_09830  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
DPV73_19375  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DPV73_06685  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DPV73_04355  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DPV73_17135  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DPV73_17145  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DPV73_11120  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DPV73_17140  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DPV73_00530  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DPV73_00525  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DPV73_15290  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DPV73_15295  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DPV73_15285  succinate:quinone oxidoreductase [KO:K00241]
DPV73_04685  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DPV73_13685  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DPV73_06745  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DPV73_13180  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DPV73_13175  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DPV73_13170  dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmay00010  Glycolysis / Gluconeogenesis
lmay00053  Ascorbate and aldarate metabolism
lmay00061  Fatty acid biosynthesis
lmay00071  Fatty acid degradation
lmay00190  Oxidative phosphorylation
lmay00220  Arginine biosynthesis
lmay00250  Alanine, aspartate and glutamate metabolism
lmay00280  Valine, leucine and isoleucine degradation
lmay00350  Tyrosine metabolism
lmay00470  D-Amino acid metabolism
lmay00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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