KEGG   PATHWAY: lmi00020
Entry
lmi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leishmania mexicana
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmi00020  Citrate cycle (TCA cycle)
lmi00020

Module
lmi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lmi00020]
lmi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmi00020]
lmi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmi00020]
Other DBs
GO: 0006099
Organism
Leishmania mexicana [GN:lmi]
Gene
LMXM_18_0680  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
LMXM_18_0670  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
LMXM_18_0510  putative aconitase [KO:K01681] [EC:4.2.1.3]
LMXM_32_2550  putative isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LMXM_10_0290  putative isocitrate dehydrogenase [NADP], mitochondrial precursor [KO:K00031] [EC:1.1.1.42]
LMXM_36_3470  2-oxoglutarate dehydrogenase E1 component,putative [KO:K00164] [EC:1.2.4.2]
LMXM_27_0880  putative 2-oxoglutarate dehydrogenase subunit [KO:K00164] [EC:1.2.4.2]
LMXM_28_2420  putative 2-oxoglutarate dehydrogenase, E2 component,dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LMXM_31_3310  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMXM_30_2650  acetoin dehydrogenase e3 component-like protein [KO:K00382] [EC:1.8.1.4]
LMXM_30_2640  2-oxoglutarate dehydrogenase, e3 component,lipoamidedehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
LMXM_08_29_1830  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMXM_25_2130  putative succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LMXM_25_2140  putative succinyl-CoA synthetase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LMXM_36_2950  succinyl-CoA ligase [GDP-forming] beta-chain,putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LMXM_24_1630  putative succinate dehydrogenase flavoprotein [KO:K00234] [EC:1.3.5.1]
LMXM_15_0990  putative succinate dehydrogenase [KO:K00235] [EC:1.3.5.1]
LMXM_24_0320  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LMXM_28_2860  putative cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
LMXM_33_0130  putative malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LMXM_33_0140  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LMXM_33_0150  putative malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LMXM_33_0160  putative malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LMXM_19_0710  glycosomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LMXM_27_1805  glycosomal phosphoenolpyruvate carboxykinase,putative [KO:K01610] [EC:4.1.1.49]
LMXM_27_1807  hypothetical protein [KO:K01610] [EC:4.1.1.49]
LMXM_27_1810  glycosomal phosphoenolpyruvate carboxykinase,putative [KO:K01610] [EC:4.1.1.49]
LMXM_18_1380  putative pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
LMXM_25_1710  putative pyruvate dehydrogenase E1 beta subunit [KO:K00162] [EC:1.2.4.1]
LMXM_21_0550  dihydrolipoamide acetyltransferase precursorlike protein [KO:K00627] [EC:2.3.1.12]
LMXM_36_2660  dihydrolipoamide acetyltransferase precursor,putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmi00010  Glycolysis / Gluconeogenesis
lmi00053  Ascorbate and aldarate metabolism
lmi00061  Fatty acid biosynthesis
lmi00062  Fatty acid elongation
lmi00071  Fatty acid degradation
lmi00190  Oxidative phosphorylation
lmi00220  Arginine biosynthesis
lmi00250  Alanine, aspartate and glutamate metabolism
lmi00280  Valine, leucine and isoleucine degradation
lmi00350  Tyrosine metabolism
lmi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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