KEGG   PATHWAY: lpan00020
Entry
lpan00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Leishmania panamensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpan00020  Citrate cycle (TCA cycle)
lpan00020

Module
lpan_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lpan00020]
lpan_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpan00020]
lpan_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpan00020]
Other DBs
GO: 0006099
Organism
Leishmania panamensis [GN:lpan]
Gene
LPMP_180430  citrate synthase, putative [KO:K01647] [EC:2.3.3.1]
LPMP_180440  citrate synthase, putative [KO:K01647] [EC:2.3.3.1]
LPMP_180630  aconitase, putative [KO:K01681] [EC:4.2.1.3]
LPMP_332660  isocitrate dehydrogenase, putative [KO:K00031] [EC:1.1.1.42]
LPMP_100290  isocitrate dehydrogenase [NADP], mitochondrial precursor, putative [KO:K00031] [EC:1.1.1.42]
LPMP_270880  2-oxoglutarate dehydrogenase subunit, putative [KO:K00164] [EC:1.2.4.2]
LPMP_353550  2-oxoglutarate dehydrogenase E1 component, putative [KO:K00164] [EC:1.2.4.2]
LPMP_282560  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase, putative [KO:K00658] [EC:2.3.1.61]
LPMP_291840  GCVL-1; dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
LPMP_312470  2-oxoglutarate dehydrogenase, e3 component, lipoamidedehydrogenase-like protein [KO:K00382] [EC:1.8.1.4]
LPMP_312480  acetoin dehydrogenase e3 component-like protein [KO:K00382] [EC:1.8.1.4]
LPMP_323490  GCVL-2; dihydrolipoamide dehydrogenase, putative [KO:K00382] [EC:1.8.1.4]
LPMP_252220  succinyl-CoA synthetase alpha subunit, putative [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LPMP_353020  succinyl-CoA ligase [GDP-forming] beta-chain, putative [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LPMP_241600  succinate dehydrogenase flavoprotein, putative [KO:K00234] [EC:1.3.5.1]
LPMP_240310  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
LPMP_291970  fumarate hydratase, putative [KO:K01676] [EC:4.2.1.2]
LPMP_283010  CMDH; cytosolic malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
LPMP_190680  glycosomal malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LPMP_200180  MMDH; mitochondrial malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LPMP_200190  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
LPMP_200200  malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LPMP_200210  malate dehydrogenase, putative [KO:K00026] [EC:1.1.1.37]
LPMP_271790  glycosomal phosphoenolpyruvate carboxykinase, putative [KO:K01610] [EC:4.1.1.49]
LPMP_181340  pyruvate dehydrogenase E1 component alpha subunit, putative [KO:K00161] [EC:1.2.4.1]
LPMP_251790  pyruvate dehydrogenase E1 beta subunit, putative [KO:K00162] [EC:1.2.4.1]
LPMP_210580  dihydrolipoamide acetyltransferase precursorlike protein [KO:K00627] [EC:2.3.1.12]
LPMP_352720  dihydrolipoamide acetyltransferase precursor, putative [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpan00010  Glycolysis / Gluconeogenesis
lpan00053  Ascorbate and aldarate metabolism
lpan00061  Fatty acid biosynthesis
lpan00062  Fatty acid elongation
lpan00071  Fatty acid degradation
lpan00190  Oxidative phosphorylation
lpan00220  Arginine biosynthesis
lpan00250  Alanine, aspartate and glutamate metabolism
lpan00280  Valine, leucine and isoleucine degradation
lpan00350  Tyrosine metabolism
lpan00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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