KEGG   PATHWAY: lpil00020
Entry
lpil00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Limnochorda pilosa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpil00020  Citrate cycle (TCA cycle)
lpil00020

Module
lpil_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lpil00020]
lpil_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lpil00020]
lpil_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lpil00020]
lpil_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lpil00020]
lpil_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpil00020]
Other DBs
GO: 0006099
Organism
Limnochorda pilosa [GN:lpil]
Gene
LIP_0231  citrate synthase [KO:K01647] [EC:2.3.3.1]
LIP_1111  citrate synthase [KO:K01659] [EC:2.3.3.5]
LIP_1453  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
LIP_1411  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
LIP_0199  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LIP_3324  2-ketoisovalerate ferredoxin reductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LIP_3337  hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LIP_3408  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LIP_3535  pyruvate ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LIP_3584  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LIP_3325  MFS transporter [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LIP_3338  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LIP_3409  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LIP_3534  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LIP_3585  2-oxoacid ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LIP_3326  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
LIP_3323  tungsten formylmethanofuran dehydrogenase [KO:K00176] [EC:1.2.7.3]
LIP_3640  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
LIP_3641  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
LIP_1159  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LIP_1160  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LIP_1157  succinate dehydrogenase [KO:K00241]
LIP_1158  succinate dehydrogenase [KO:K00242]
LIP_1303  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LIP_1304  fumarate hydratase, class I [KO:K01678] [EC:4.2.1.2]
LIP_0149  aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
LIP_1537  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LIP_2686  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LIP_0202  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
LIP_0201  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
LIP_0200  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
LIP_0017  pyruvate synthase [KO:K00169] [EC:1.2.7.1]
LIP_0016  ferredoxin [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpil00010  Glycolysis / Gluconeogenesis
lpil00053  Ascorbate and aldarate metabolism
lpil00061  Fatty acid biosynthesis
lpil00071  Fatty acid degradation
lpil00190  Oxidative phosphorylation
lpil00220  Arginine biosynthesis
lpil00250  Alanine, aspartate and glutamate metabolism
lpil00280  Valine, leucine and isoleucine degradation
lpil00350  Tyrosine metabolism
lpil00470  D-Amino acid metabolism
lpil00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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