KEGG   PATHWAY: lrd00020
Entry
lrd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lolium rigidum (rigid ryegrass)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lrd00020  Citrate cycle (TCA cycle)
lrd00020

Module
lrd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lrd00020]
lrd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lrd00020]
lrd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lrd00020]
lrd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lrd00020]
lrd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lrd00020]
Other DBs
GO: 0006099
Organism
Lolium rigidum (rigid ryegrass) [GN:lrd]
Gene
124691920  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
124692000  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
124692098  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
124692101  citrate synthase, glyoxysomal-like [KO:K01647] [EC:2.3.3.1]
124653819  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
124703122  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
124703138  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
124660399  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
124660799  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
124701365  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124701392  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124688961  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124676529  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
124702859  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
124660549  cytosolic isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
124660582  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
124674481  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
124692719  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
124692727  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
124692831  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
124692833  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
124675069  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
124676612  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
124673733  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
124674643  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
124675555  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
124703422  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
124703713  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
124674169  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
124674725  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
124706791  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
124660301  dihydrolipoyl dehydrogenase 1, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
124707935  dihydrolipoyl dehydrogenase 2, chloroplastic-like isoform X1 [KO:K00382] [EC:1.8.1.4]
124646611  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
124662671  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
124662672  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
124670540  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
124675542  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
124692864  LOW QUALITY PROTEIN: succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
124670420  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
124702796  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
124704442  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
124654774  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
124654791  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
124690592  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like isoform X1 [KO:K00235] [EC:1.3.5.1]
124697378  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
124674807  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
124674814  succinate dehydrogenase subunit 3-1, mitochondrial-like [KO:K00236]
124675343  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
124660736  succinate dehydrogenase subunit 4, mitochondrial-like isoform X1 [KO:K25801]
124707750  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
124702309  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
124702412  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
124705569  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
124674218  malate dehydrogenase-like isoform X1 [KO:K00025] [EC:1.1.1.37]
124676183  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
124652233  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
124652279  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
124682611  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
124682638  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
124704425  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
124706054  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124660575  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124707041  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
124697596  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
124701980  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
124677484  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like isoform X1 [KO:K00161] [EC:1.2.4.1]
124693094  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
124693098  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
124679247  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
124673580  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
124688706  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
124674885  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
124689044  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-like [KO:K00161] [EC:1.2.4.1]
124699942  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
124653785  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
124654605  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
124703795  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
124657304  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
124707101  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
124652590  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
124682547  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
124653869  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
124653877  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
124684955  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
124684960  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
124695526  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
124691507  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
124691552  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
124697486  dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lrd00010  Glycolysis / Gluconeogenesis
lrd00053  Ascorbate and aldarate metabolism
lrd00061  Fatty acid biosynthesis
lrd00062  Fatty acid elongation
lrd00071  Fatty acid degradation
lrd00190  Oxidative phosphorylation
lrd00220  Arginine biosynthesis
lrd00250  Alanine, aspartate and glutamate metabolism
lrd00280  Valine, leucine and isoleucine degradation
lrd00350  Tyrosine metabolism
lrd00470  D-Amino acid metabolism
lrd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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