KEGG   PATHWAY: lrj00020
Entry
lrj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lethenteron reissneri (Far Eastern brook lamprey)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lrj00020  Citrate cycle (TCA cycle)
lrj00020

Module
lrj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lrj00020]
lrj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lrj00020]
lrj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lrj00020]
lrj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lrj00020]
Other DBs
GO: 0006099
Organism
Lethenteron reissneri (Far Eastern brook lamprey) [GN:lrj]
Gene
133339247  [KO:K00627] [EC:2.3.1.12]
133339541  SDHB; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
133341184  FH; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
133341899  [KO:K00164] [EC:1.2.4.2]
133342275  [KO:K01958] [EC:6.4.1.1]
133343476  SUCLG1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
133343717  [KO:K01681] [EC:4.2.1.3]
133343801  [KO:K00030] [EC:1.1.1.41]
133344807  [KO:K01648] [EC:2.3.3.8]
133345095  [KO:K01648] [EC:2.3.3.8]
133346439  ACO1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
133347344  MDH1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
133347474  SDHC; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
133347764  SDHD; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
133348294  MDH2; malate dehydrogenase, mitochondrial isoform X1 [KO:K00026] [EC:1.1.1.37]
133349632  SDHA; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
133351000  IDH2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
133351773  DLD; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
133351959  [KO:K00030] [EC:1.1.1.41]
133354919  [KO:K01596] [EC:4.1.1.32]
133355398  SUCLG2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
133355463  IDH3G; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
133356341  CS; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
133356381  DLST; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
133356461  PDHB; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
133356480  IDH1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
133357269  [KO:K01900] [EC:6.2.1.4 6.2.1.5]
133357270  SUCLA2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
133358575  [KO:K00627] [EC:2.3.1.12]
133358670  ACO2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lrj00010  Glycolysis / Gluconeogenesis
lrj00053  Ascorbate and aldarate metabolism
lrj00061  Fatty acid biosynthesis
lrj00062  Fatty acid elongation
lrj00071  Fatty acid degradation
lrj00190  Oxidative phosphorylation
lrj00220  Arginine biosynthesis
lrj00250  Alanine, aspartate and glutamate metabolism
lrj00280  Valine, leucine and isoleucine degradation
lrj00350  Tyrosine metabolism
lrj00470  D-Amino acid metabolism
lrj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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