KEGG   PATHWAY: lroh00020
Entry
lroh00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Labeo rohita (rohu)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lroh00020  Citrate cycle (TCA cycle)
lroh00020

Module
lroh_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lroh00020]
lroh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lroh00020]
lroh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lroh00020]
lroh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lroh00020]
lroh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lroh00020]
Other DBs
GO: 0006099
Organism
Labeo rohita (rohu) [GN:lroh]
Gene
127154782  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127174118  aclyb; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
127163108  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
127174022  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
127169012  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
127171102  idh1; isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
127180365  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
127154830  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
127155329  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
127156693  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127152142  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127172231  ogdhb; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
127169333  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
127175066  ogdhl; 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
127179822  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
127156780  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
127163848  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127166516  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127173035  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127182009  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
127154834  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127157364  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
127177351  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
127164874  sdhda; succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial isoform X1 [KO:K00237]
127176854  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial [KO:K00237]
127174464  fh; fumarate hydratase, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
127167928  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
127180245  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
127172313  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
127168095  pcxb; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
127153078  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
127155629  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
127166854  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
127155429  pdha1b; pyruvate dehydrogenase E1 subunit alpha 1b [KO:K00161] [EC:1.2.4.1]
127165557  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
127154006  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
127152660  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lroh00010  Glycolysis / Gluconeogenesis
lroh00053  Ascorbate and aldarate metabolism
lroh00061  Fatty acid biosynthesis
lroh00062  Fatty acid elongation
lroh00071  Fatty acid degradation
lroh00190  Oxidative phosphorylation
lroh00220  Arginine biosynthesis
lroh00250  Alanine, aspartate and glutamate metabolism
lroh00280  Valine, leucine and isoleucine degradation
lroh00350  Tyrosine metabolism
lroh00470  D-Amino acid metabolism
lroh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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