KEGG   PATHWAY: lsin00020
Entry
lsin00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Leptidea sinapis (Wood White)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lsin00020  Citrate cycle (TCA cycle)
lsin00020

Module
lsin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lsin00020]
lsin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lsin00020]
lsin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lsin00020]
lsin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lsin00020]
lsin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lsin00020]
Other DBs
GO: 0006099
Organism
Leptidea sinapis (Wood White) [GN:lsin]
Gene
126978507  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
126973453  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
126978574  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
126966514  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
126971312  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
126965305  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126974728  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
126976812  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
126969193  2-oxoglutarate dehydrogenase complex component E1-like isoform X1 [KO:K00164] [EC:1.2.4.2]
126969296  2-oxoglutarate dehydrogenase complex component E1-like [KO:K00164] [EC:1.2.4.2]
126973395  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
126966151  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
126968209  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
126976335  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
126965700  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126971168  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
126977467  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
126979046  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like isoform X1 [KO:K00234] [EC:1.3.5.1]
126972308  uncharacterized protein LOC126972308 [KO:K00235] [EC:1.3.5.1]
126970865  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
126975104  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
126979087  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
126964811  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
126966713  fumarate hydratase, mitochondrial-like isoform X1 [KO:K01679] [EC:4.2.1.2]
126973472  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
126966859  uncharacterized protein LOC126966859 [KO:K00025] [EC:1.1.1.37]
126968023  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
126971627  malate dehydrogenase-like isoform X1 [KO:K00026] [EC:1.1.1.37]
126973772  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
126966590  malate dehydrogenase, mitochondrial-like isoform X1 [KO:K00026] [EC:1.1.1.37]
126969842  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
126970656  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
126970659  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
126974256  pyruvate carboxylase, mitochondrial isoform X1 [KO:K01958] [EC:6.4.1.1]
126969979  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
126970842  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
126969721  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
126977547  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lsin00010  Glycolysis / Gluconeogenesis
lsin00053  Ascorbate and aldarate metabolism
lsin00061  Fatty acid biosynthesis
lsin00062  Fatty acid elongation
lsin00071  Fatty acid degradation
lsin00190  Oxidative phosphorylation
lsin00220  Arginine biosynthesis
lsin00250  Alanine, aspartate and glutamate metabolism
lsin00280  Valine, leucine and isoleucine degradation
lsin00350  Tyrosine metabolism
lsin00470  D-Amino acid metabolism
lsin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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