KEGG   PATHWAY: lsin04137
Entry
lsin04137                   Pathway                                
Name
Mitophagy - animal - Leptidea sinapis (Wood White)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
lsin04137  Mitophagy - animal
lsin04137

Other DBs
GO: 0000422
Organism
Leptidea sinapis (Wood White) [GN:lsin]
Gene
126970177  mitochondrial import receptor subunit TOM40 homolog 1-like [KO:K11518]
126976120  mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
126971598  mitochondrial import receptor subunit TOM70 [KO:K17768]
126979564  E3 ubiquitin-protein ligase MARCHF5 [KO:K10660] [EC:2.3.2.27]
126979209  E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
126977961  E3 ubiquitin-protein ligase AMFR-like isoform X1 [KO:K10636] [EC:2.3.2.36]
126970107  mitochondrial E3 ubiquitin protein ligase 1 [KO:K15688] [EC:2.3.2.27]
126969442  probable E3 ubiquitin-protein ligase sinah [KO:K04506] [EC:2.3.2.27]
126970143  E3 ubiquitin-protein ligase SIAH1A-like [KO:K04506] [EC:2.3.2.27]
126970328  uncharacterized protein LOC126970328 [KO:K04506] [EC:2.3.2.27]
126973176  E3 ubiquitin-protein ligase ariadne-1 isoform X1 [KO:K11968] [EC:2.3.2.31]
126964459  transmembrane GTPase Marf [KO:K06030] [EC:3.6.5.-]
126976588  mitochondrial Rho GTPase isoform X1 [KO:K07870] [EC:3.6.5.-]
126971702  ubiquitin-60S ribosomal protein L40 [KO:K02927]
126975107  ubiquitin-40S ribosomal protein S27a [KO:K02977]
126977930  serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
126965138  gamma-aminobutyric acid receptor-associated protein [KO:K08341]
126970534  uncharacterized protein LOC126970534 [KO:K10435]
126976178  beclin-1-like protein [KO:K08334]
126975440  ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
126968938  ubiquitin carboxyl-terminal hydrolase 30 homolog [KO:K11851] [EC:3.4.19.12]
126974015  serine/threonine-protein phosphatase Pgam5, mitochondrial isoform X1 [KO:K15637] [EC:3.1.3.16]
126966463  casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
126964688  casein kinase II subunit beta isoform X1 [KO:K03115]
126968756  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
126966358  FUN14 domain-containing protein 1 [KO:K17986]
126974217  BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
126977843  peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
126964471  sorting and assembly machinery component 50 homolog A [KO:K07277]
126974125  prohibitin-2 [KO:K17081]
126976279  prohibitin-2-like [KO:K17081]
126975516  metaxin-1 isoform X1 [KO:K17776]
126975439  eukaryotic translation initiation factor 2-alpha kinase [KO:K08860] [EC:2.7.11.1]
126971008  eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
126970169  activating transcription factor of chaperone [KO:K04374]
126965302  stress-activated protein kinase JNK isoform X1 [KO:K04440] [EC:2.7.11.24]
126978009  transcription factor JunD [KO:K04448]
126965333  GTPase HRas [KO:K07827]
126969010  ras-related protein M-Ras-like [KO:K07831]
126975639  ras-like protein 2 [KO:K07830]
126970235  uncharacterized protein LOC126970235 isoform X1 [KO:K08268]
126967181  forkhead box protein O [KO:K09408]
126979715  microphthalmia-associated transcription factor isoform X1 [KO:K09105]
126970069  rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
126979818  ras-related protein Rab-5C-like isoform X1 [KO:K07888]
126968112  protein SAND isoform X1 [KO:K20195]
126975836  vacuolar fusion protein CCZ1 homolog [KO:K27045]
126965744  ras-related protein Rab-7a [KO:K07897]
126967969  TBC1 domain family member 15 isoform X1 [KO:K20168]
126969126  mitochondrial fission 1 protein [KO:K17969]
126978913  autophagy-related protein 9A [KO:K17907]
126972252  dynamin-like 120 kDa protein, mitochondrial isoform X1 [KO:K17079] [EC:3.6.5.5]
126977924  transitional endoplasmic reticulum ATPase TER94 [KO:K13525]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
lsin04140  Autophagy - animal
KO pathway
ko04137   
LinkDB

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