KEGG   PATHWAY: lsm00020
Entry
lsm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lepeophtheirus salmonis (salmon louse)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lsm00020  Citrate cycle (TCA cycle)
lsm00020

Module
lsm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lsm00020]
lsm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lsm00020]
lsm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lsm00020]
lsm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lsm00020]
lsm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lsm00020]
Other DBs
GO: 0006099
Organism
Lepeophtheirus salmonis (salmon louse) [GN:lsm]
Gene
121127255  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
121121478  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
121121680  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
121116431  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
121122337  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
121132306  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
121124232  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
121124587  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
121124899  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
121117983  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
121123663  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121127342  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
121121256  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
121121038  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121113647  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
121116334  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121126235  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121125099  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
121127655  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121132609  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
121122757  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
121128721  LOW QUALITY PROTEIN: fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
121123715  malate dehydrogenase, cytoplasmic-like isoform X1 [KO:K00025] [EC:1.1.1.37]
121121272  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121122201  pyruvate carboxylase 1-like [KO:K01958] [EC:6.4.1.1]
121121608  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
121128573  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
121118948  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121123767  pyruvate dehydrogenase protein X component, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
121131405  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lsm00010  Glycolysis / Gluconeogenesis
lsm00053  Ascorbate and aldarate metabolism
lsm00061  Fatty acid biosynthesis
lsm00062  Fatty acid elongation
lsm00071  Fatty acid degradation
lsm00190  Oxidative phosphorylation
lsm00220  Arginine biosynthesis
lsm00250  Alanine, aspartate and glutamate metabolism
lsm00280  Valine, leucine and isoleucine degradation
lsm00350  Tyrosine metabolism
lsm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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