KEGG   PATHWAY: lsv00940
Entry
lsv00940                    Pathway                                
Name
Phenylpropanoid biosynthesis - Lactuca sativa (garden lettuce)
Description
Phenylpropanoids are a group of plant secondary metabolites derived from phenylalanine and having a wide variety of functions both as structural and signaling molecules. Phenylalanine is first converted to cinnamic acid by deamination. It is followed by hydroxylation and frequent methylation to generate coumaric acid and other acids with a phenylpropane (C6-C3) unit. Reduction of the CoA-activated carboxyl groups of these acids results in the corresponding aldehydes and alcohols. The alcohols are called monolignols, the starting compounds for biosynthesis of lignin.
Class
Metabolism; Biosynthesis of other secondary metabolites
Pathway map
lsv00940  Phenylpropanoid biosynthesis
lsv00940

Module
lsv_M00039  Monolignol biosynthesis, phenylalanine/tyrosine => monolignol [PATH:lsv00940]
lsv_M00137  Flavanone biosynthesis, phenylalanine => naringenin [PATH:lsv00940]
Other DBs
GO: 0009699
Organism
Lactuca sativa (garden lettuce) [GN:lsv]
Gene
111893052  phenylalanine ammonia-lyase [KO:K10775] [EC:4.3.1.24]
111894107  phenylalanine ammonia-lyase [KO:K10775] [EC:4.3.1.24]
111915057  phenylalanine ammonia-lyase G4 [KO:K10775] [EC:4.3.1.24]
111916376  phenylalanine ammonia-lyase [KO:K10775] [EC:4.3.1.24]
111916377  phenylalanine ammonia-lyase [KO:K10775] [EC:4.3.1.24]
111876528  trans-cinnamate 4-monooxygenase [KO:K00487] [EC:1.14.14.91]
111886666  trans-cinnamate 4-monooxygenase [KO:K00487] [EC:1.14.14.91]
111897824  probable CoA ligase CCL7 [KO:K01904] [EC:6.2.1.12]
111892323  4-coumarate--CoA ligase 2 [KO:K01904] [EC:6.2.1.12]
111892869  4-coumarate--CoA ligase 2 [KO:K01904] [EC:6.2.1.12]
111893021  probable CoA ligase CCL7 [KO:K01904] [EC:6.2.1.12]
111897689  probable CoA ligase CCL7 [KO:K01904] [EC:6.2.1.12]
111897772  probable CoA ligase CCL7 [KO:K01904] [EC:6.2.1.12]
111914848  4-coumarate--CoA ligase 1 [KO:K01904] [EC:6.2.1.12]
111877345  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
111875845  4-coumarate--CoA ligase-like 1 [KO:K01904] [EC:6.2.1.12]
111887519  4-coumarate--CoA ligase-like 6 [KO:K01904] [EC:6.2.1.12]
111918324  4-coumarate--CoA ligase-like 9 [KO:K01904] [EC:6.2.1.12]
111892226  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
111914857  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
111919896  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
111878060  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
111878160  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
111881682  shikimate O-hydroxycinnamoyltransferase [KO:K13065] [EC:2.3.1.133]
111885009  spermidine hydroxycinnamoyl transferase [KO:K13065] [EC:2.3.1.133]
111902988  acyltransferase GLAUCE [KO:K13065] [EC:2.3.1.133]
111891710  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
111919428  LOW QUALITY PROTEIN: cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
111908828  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
111877005  cytochrome P450 98A2 [KO:K09754] [EC:1.14.14.96]
111895259  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111910230  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111910234  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111910235  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111907199  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111908255  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111911235  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111909471  caffeoylshikimate esterase [KO:K18368] [EC:3.1.1.-]
111921494  caffeoylshikimate esterase isoform X1 [KO:K18368] [EC:3.1.1.-]
111895275  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111895278  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111877537  probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
111876731  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111876734  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111877593  caffeoyl-CoA O-methyltransferase 5 [KO:K00588] [EC:2.1.1.104]
111883858  probable caffeoyl-CoA O-methyltransferase At4g26220 [KO:K00588] [EC:2.1.1.104]
111885272  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111885273  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111885277  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111885713  caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111887149  LOW QUALITY PROTEIN: caffeoyl-CoA O-methyltransferase [KO:K00588] [EC:2.1.1.104]
111887151  caffeoyl-CoA O-methyltransferase isoform X2 [KO:K00588] [EC:2.1.1.104]
128132220  caffeoyl-CoA O-methyltransferase isoform X1 [KO:K00588] [EC:2.1.1.104]
128132221  caffeoyl-CoA O-methyltransferase isoform X1 [KO:K00588] [EC:2.1.1.104]
128132222  caffeoyl-CoA O-methyltransferase isoform X1 [KO:K00588] [EC:2.1.1.104]
111892196  cinnamoyl-CoA reductase 1 [KO:K09753] [EC:1.2.1.44]
111897913  aldehyde dehydrogenase 1 [KO:K12355] [EC:1.2.1.68]
111897919  aldehyde dehydrogenase 1 [KO:K12355] [EC:1.2.1.68]
111899225  aldehyde dehydrogenase family 2 member C4 isoform X1 [KO:K12355] [EC:1.2.1.68]
111904175  aldehyde dehydrogenase family 2 member C4 isoform X1 [KO:K12355] [EC:1.2.1.68]
111895133  cytochrome P450 84A1 [KO:K09755] [EC:1.14.-.-]
111897462  cytochrome P450 84A1 [KO:K09755] [EC:1.14.-.-]
111920419  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
111903002  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
111903004  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
111903396  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
111885575  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
111885585  caffeic acid 3-O-methyltransferase [KO:K13066] [EC:2.1.1.68 2.1.1.4]
111899992  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
111907868  probable cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
111903864  probable cinnamyl alcohol dehydrogenase 6 [KO:K00083] [EC:1.1.1.195]
111917126  cinnamyl alcohol dehydrogenase 1 [KO:K00083] [EC:1.1.1.195]
111896355  probable cinnamyl alcohol dehydrogenase [KO:K00083] [EC:1.1.1.195]
111892473  berberine bridge enzyme-like 15 [KO:K22395] [EC:1.1.1.195]
111899001  berberine bridge enzyme-like 13 [KO:K22395] [EC:1.1.1.195]
111905434  berberine bridge enzyme-like 15 [KO:K22395] [EC:1.1.1.195]
111905552  berberine bridge enzyme-like 15 [KO:K22395] [EC:1.1.1.195]
111880404  1-Cys peroxiredoxin PER1 [KO:K11188] [EC:1.11.1.7 1.11.1.27 3.1.1.-]
111898049  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
111898050  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
122194372  peroxidase N [KO:K00430] [EC:1.11.1.7]
111898324  probable peroxidase 26 [KO:K00430] [EC:1.11.1.7]
111891035  peroxidase 42 [KO:K00430] [EC:1.11.1.7]
111891445  peroxidase 12 [KO:K00430] [EC:1.11.1.7]
111894964  peroxidase 11 [KO:K00430] [EC:1.11.1.7]
111895587  peroxidase 10 [KO:K00430] [EC:1.11.1.7]
111892158  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
111892418  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111892419  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111892420  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111892422  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111896394  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896402  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896403  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896407  peroxidase N1 isoform X2 [KO:K00430] [EC:1.11.1.7]
111896412  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896418  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896419  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896420  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111896422  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111893069  peroxidase 21 isoform X1 [KO:K00430] [EC:1.11.1.7]
111890731  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
111890797  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
111897614  peroxidase 47 [KO:K00430] [EC:1.11.1.7]
111899520  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111899521  peroxidase N1 [KO:K00430] [EC:1.11.1.7]
111899571  peroxidase 43 [KO:K00430] [EC:1.11.1.7]
111917490  peroxidase 7 [KO:K00430] [EC:1.11.1.7]
111917714  lignin-forming anionic peroxidase [KO:K00430] [EC:1.11.1.7]
111917741  lignin-forming anionic peroxidase [KO:K00430] [EC:1.11.1.7]
111914667  basic peroxidase [KO:K00430] [EC:1.11.1.7]
111919669  peroxidase P7 [KO:K00430] [EC:1.11.1.7]
111915440  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
111915473  peroxidase 7 [KO:K00430] [EC:1.11.1.7]
111920252  probable peroxidase 26 [KO:K00430] [EC:1.11.1.7]
111910447  peroxidase 11 [KO:K00430] [EC:1.11.1.7]
111912395  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
111912402  peroxidase 72 [KO:K00430] [EC:1.11.1.7]
111905225  probable peroxidase 26 [KO:K00430] [EC:1.11.1.7]
111913134  basic peroxidase [KO:K00430] [EC:1.11.1.7]
111902773  peroxidase 51 [KO:K00430] [EC:1.11.1.7]
111905466  peroxidase 60 [KO:K00430] [EC:1.11.1.7]
111905467  peroxidase 60 [KO:K00430] [EC:1.11.1.7]
111905468  peroxidase 60 [KO:K00430] [EC:1.11.1.7]
111905469  peroxidase 60 [KO:K00430] [EC:1.11.1.7]
111908979  lignin-forming anionic peroxidase [KO:K00430] [EC:1.11.1.7]
111903785  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111903786  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111903787  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111903790  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111903792  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111909001  lignin-forming anionic peroxidase [KO:K00430] [EC:1.11.1.7]
111903893  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
111903894  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
111903895  peroxidase 64 [KO:K00430] [EC:1.11.1.7]
111892423  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111901232  peroxidase 20 [KO:K00430] [EC:1.11.1.7]
111901384  peroxidase 19 [KO:K00430] [EC:1.11.1.7]
111901452  peroxidase 66 [KO:K00430] [EC:1.11.1.7]
111904298  peroxidase 63 [KO:K00430] [EC:1.11.1.7]
111904309  peroxidase 43 [KO:K00430] [EC:1.11.1.7]
111904350  peroxidase 3 [KO:K00430] [EC:1.11.1.7]
111903770  peroxidase 27 [KO:K00430] [EC:1.11.1.7]
111913845  peroxidase 16 [KO:K00430] [EC:1.11.1.7]
111913864  peroxidase 16 [KO:K00430] [EC:1.11.1.7]
111876453  peroxidase 63 [KO:K00430] [EC:1.11.1.7]
111877700  peroxidase 51 [KO:K00430] [EC:1.11.1.7]
111877715  peroxidase 55 [KO:K00430] [EC:1.11.1.7]
111878774  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
111878787  peroxidase 4 [KO:K00430] [EC:1.11.1.7]
111879417  peroxidase 5 [KO:K00430] [EC:1.11.1.7]
111880960  peroxidase 9 [KO:K00430] [EC:1.11.1.7]
111881485  peroxidase 41 [KO:K00430] [EC:1.11.1.7]
111881609  peroxidase 9 [KO:K00430] [EC:1.11.1.7]
111883433  peroxidase 17 [KO:K00430] [EC:1.11.1.7]
111884532  putative Peroxidase 48 isoform X1 [KO:K00430] [EC:1.11.1.7]
111885086  peroxidase 24 [KO:K00430] [EC:1.11.1.7]
111885088  peroxidase 24 [KO:K00430] [EC:1.11.1.7]
111885102  peroxidase 24 [KO:K00430] [EC:1.11.1.7]
111887868  peroxidase N [KO:K00430] [EC:1.11.1.7]
111887936  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
111887938  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
111887940  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
111887943  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
111887950  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
111887994  cationic peroxidase 1 [KO:K00430] [EC:1.11.1.7]
111887204  peroxidase 25 [KO:K00430] [EC:1.11.1.7]
111917713  lignin-forming anionic peroxidase-like [KO:K00430] [EC:1.11.1.7]
128125932  lignin-forming anionic peroxidase-like [KO:K00430] [EC:1.11.1.7]
128133806  lignin-forming anionic peroxidase-like [KO:K00430] [EC:1.11.1.7]
128133807  lignin-forming anionic peroxidase-like [KO:K00430] [EC:1.11.1.7]
111908234  anthocyanidin 3-O-glucosyltransferase 5 [KO:K12356] [EC:2.4.1.111]
111908243  anthocyanidin 3-O-glucosyltransferase 5 [KO:K12356] [EC:2.4.1.111]
Compound
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00223  p-Coumaroyl-CoA
C00315  Spermidine
C00323  Caffeoyl-CoA
C00406  Feruloyl-CoA
C00411  Sinapoyl-CoA
C00423  trans-Cinnamate
C00482  Sinapate
C00540  Cinnamoyl-CoA
C00590  Coniferyl alcohol
C00761  Coniferin
C00811  4-Coumarate
C00852  Chlorogenate
C00903  Cinnamaldehyde
C00933  Sinapine
C01175  1-O-Sinapoyl-beta-D-glucose
C01197  Caffeate
C01494  Ferulate
C01533  Syringin
C02325  Sinapyl alcohol
C02646  4-Coumaryl alcohol
C02666  Coniferyl aldehyde
C02887  Sinapoyl malate
C02947  4-Coumaroylshikimate
C04366  3-(2-Carboxyethenyl)-cis,cis-muconate
C05608  4-Hydroxycinnamyl aldehyde
C05610  Sinapoyl aldehyde
C05619  5-Hydroxyferulic acid
C05627  4-Hydroxystyrene
C05855  4-Hydroxycinnamyl alcohol 4-D-glucoside
C06224  3,4-Dihydroxystyrene
C10428  Anethole
C10434  5-O-Caffeoylshikimic acid
C10452  Estragole
C10453  Eugenol
C10454  Methyleugenol
C10469  Isoeugenol
C10478  Methylisoeugenol
C10945  Caffeic aldehyde
C12203  5-Hydroxyferuloyl-CoA
C12204  5-Hydroxyconiferaldehyde
C12205  5-Hydroxyconiferyl alcohol
C12206  Caffeyl alcohol
C12208  p-Coumaroyl quinic acid
C15804  p-Hydroxyphenyl lignin
C15805  Guaiacyl lignin
C15806  Syringyl lignin
C15807  5-Hydroxy-guaiacyl lignin
C16930  Chavicol
C18069  N1,N5,N10-Tricoumaroyl spermidine
C18070  N1,N5,N10-Tricaffeoyl spermidine
C18071  N1,N5,N10-Triferuloyl spermidine
C18072  N1,N5,N10-Tri(hydroxyferuloyl) spermidine
C18073  N1,N5-Di(hydroxyferuloyl)-N10-sinapoyl spermidine
C20225  Coniferyl acetate
C20464  Isochavicol
C20465  Coumaryl acetate
Reference
  Authors
Nair RB, Bastress KL, Ruegger MO, Denault JW, Chapple C.
  Title
The Arabidopsis thaliana REDUCED EPIDERMAL FLUORESCENCE1 gene encodes an aldehyde dehydrogenase involved in ferulic acid and sinapic acid biosynthesis.
  Journal
Plant Cell 16:544-54 (2004)
DOI:10.1105/tpc.017509
Reference
  Authors
Baucher M, Halpin C, Petit-Conil M, Boerjan W.
  Title
Lignin: genetic engineering and impact on pulping.
  Journal
Crit Rev Biochem Mol Biol 38:305-50 (2003)
DOI:10.1080/10409230391036757
Reference
  Authors
Rogers LA, Dubos C, Cullis IF, Surman C, Poole M, Willment J, Mansfield SD, Campbell MM.
  Title
Light, the circadian clock, and sugar perception in the control of lignin biosynthesis.
  Journal
J Exp Bot 56:1651-63 (2005)
DOI:10.1093/jxb/eri162
Reference
  Authors
Whetten R, Sederoff R.
  Title
Lignin Biosynthesis.
  Journal
Plant Cell 7:1001-1013 (1995)
DOI:10.1105/tpc.7.7.1001
Reference
PMID:8972602
  Authors
Lorenzen M, Racicot V, Strack D, Chapple C.
  Title
Sinapic acid ester metabolism in wild type and a sinapoylglucose-accumulating mutant of arabidopsis.
  Journal
Plant Physiol 112:1625-30 (1996)
DOI:10.1104/pp.112.4.1625
Reference
PMID:1477555
  Authors
Chapple CC, Vogt T, Ellis BE, Somerville CR.
  Title
An Arabidopsis mutant defective in the general phenylpropanoid pathway.
  Journal
Plant Cell 4:1413-24 (1992)
DOI:10.1105/tpc.4.11.1413
Reference
  Authors
Raes J, Rohde A, Christensen JH, Van de Peer Y, Boerjan W.
  Title
Genome-wide characterization of the lignification toolbox in Arabidopsis.
  Journal
Plant Physiol 133:1051-71 (2003)
DOI:10.1104/pp.103.026484
Reference
  Authors
Costa MA, Collins RE, Anterola AM, Cochrane FC, Davin LB, Lewis NG.
  Title
An in silico assessment of gene function and organization of the phenylpropanoid pathway metabolic networks in Arabidopsis thaliana and limitations thereof.
  Journal
Phytochemistry 64:1097-112 (2003)
DOI:10.1016/S0031-9422(03)00517-X
Reference
  Authors
Meyermans H, Morreel K, Lapierre C, Pollet B, De Bruyn A, Busson R, Herdewijn P, Devreese B, Van Beeumen J, Marita JM, Ralph J, Chen C, Burggraeve B, Van Montagu M, Messens E, Boerjan W.
  Title
Modifications in lignin and accumulation of phenolic glucosides in poplar xylem upon down-regulation of caffeoyl-coenzyme A O-methyltransferase, an enzyme involved in lignin biosynthesis.
  Journal
J Biol Chem 275:36899-909 (2000)
DOI:10.1074/jbc.M006915200
Reference
  Authors
Gachon CM, Langlois-Meurinne M, Henry Y, Saindrenan P.
  Title
Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications.
  Journal
Plant Mol Biol 58:229-45 (2005)
DOI:10.1007/s11103-005-5346-5
Reference
  Authors
Li L, Popko JL, Umezawa T, Chiang VL.
  Title
5-hydroxyconiferyl aldehyde modulates enzymatic methylation for syringyl monolignol formation, a new view of monolignol biosynthesis in angiosperms.
  Journal
J Biol Chem 275:6537-45 (2000)
DOI:10.1074/jbc.275.9.6537
Reference
  Authors
Yamauchi K, Yasuda S, Fukushima K.
  Title
Evidence for the biosynthetic pathway from sinapic acid to syringyl lignin using labeled sinapic acid with stable isotope at both methoxy groups in Robinia pseudoacacia and Nerium indicum.
  Journal
J Agric Food Chem 50:3222-7 (2002)
DOI:10.1021/jf011565x
Reference
  Authors
Eckardt NA.
  Title
Probing the mysteries of lignin biosynthesis: the crystal structure of caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase provides new insights.
  Journal
Plant Cell 14:1185-9 (2002)
DOI:10.1105/tpc.140610
Related
pathway
lsv00130  Ubiquinone and other terpenoid-quinone biosynthesis
lsv00400  Phenylalanine, tyrosine and tryptophan biosynthesis
lsv00941  Flavonoid biosynthesis
lsv00945  Stilbenoid, diarylheptanoid and gingerol biosynthesis
KO pathway
ko00940   
LinkDB

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