KEGG   PATHWAY: lwl00020
Entry
lwl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Leptospira weilii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lwl00020  Citrate cycle (TCA cycle)
lwl00020

Module
lwl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lwl00020]
lwl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lwl00020]
lwl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lwl00020]
lwl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lwl00020]
lwl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lwl00020]
Other DBs
GO: 0006099
Organism
Leptospira weilii [GN:lwl]
Gene
FHG68_04230  citrate synthase [KO:K01647] [EC:2.3.3.1]
FHG68_02260  citrate synthase [KO:K01647] [EC:2.3.3.1]
FHG68_20685  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FHG68_01635  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FHG68_18355  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FHG68_13570  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FHG68_13580  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FHG68_05945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FHG68_13575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FHG68_14525  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FHG68_14520  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FHG68_11300  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FHG68_11305  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FHG68_11295  succinate:quinone oxidoreductase [KO:K00241]
FHG68_00795  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FHG68_09460  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FHG68_18300  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FHG68_11450  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FHG68_11455  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FHG68_11460  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lwl00010  Glycolysis / Gluconeogenesis
lwl00053  Ascorbate and aldarate metabolism
lwl00061  Fatty acid biosynthesis
lwl00071  Fatty acid degradation
lwl00190  Oxidative phosphorylation
lwl00220  Arginine biosynthesis
lwl00250  Alanine, aspartate and glutamate metabolism
lwl00280  Valine, leucine and isoleucine degradation
lwl00350  Tyrosine metabolism
lwl00470  D-Amino acid metabolism
lwl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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