KEGG   PATHWAY: lyb00630
Entry
lyb00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Lysinibacillus sp. B2A1
Class
Metabolism; Carbohydrate metabolism
Pathway map
lyb00630  Glyoxylate and dicarboxylate metabolism
lyb00630

Module
lyb_M00012  Glyoxylate cycle [PATH:lyb00630]
lyb_M00621  Glycine cleavage system [PATH:lyb00630]
Other DBs
GO: 0046487 0043648
Organism
Lysinibacillus sp. B2A1 [GN:lyb]
Gene
C3943_00730  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
C3943_09975  acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
C3943_10110  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
C3943_25860  acyl--CoA ligase [KO:K01895] [EC:6.2.1.1]
C3943_00735  malate synthase A [KO:K01638] [EC:2.3.3.9]
C3943_09560  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3943_19215  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3943_10220  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C3943_10210  citrate synthase [KO:K01647] [EC:2.3.3.1]
C3943_16040  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C3943_07110  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C3943_03355  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C3943_01975  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
C3943_10225  enoyl-CoA hydratase [KO:K17865] [EC:4.2.1.55]
C3943_13800  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
C3943_13805  methylmalonyl-CoA carboxyltransferase [KO:K01966] [EC:6.4.1.3 2.1.3.15]
C3943_13775  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
C3943_13780  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
C3943_22875  catalase [KO:K03781] [EC:1.11.1.6]
C3943_01335  catalase [KO:K03781] [EC:1.11.1.6]
C3943_04705  catalase HPII [KO:K03781] [EC:1.11.1.6]
C3943_02620  D-glycerate dehydrogenase [KO:K00015] [EC:1.1.1.26]
C3943_08870  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C3943_19275  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
C3943_07050  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
C3943_20035  haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]
C3943_24955  nucleosidase [KO:K01091] [EC:3.1.3.18]
C3943_06830  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C3943_07290  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
C3943_09425  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C3943_03520  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
C3943_13285  aminomethyl-transferring glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]
C3943_13290  glycine dehydrogenase (aminomethyl-transferring) [KO:K00283] [EC:1.4.4.2]
C3943_13280  gcvT; glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
C3943_13755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3943_26650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3943_22930  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3943_05180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3943_04710  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C3943_21410  gcvH; glycine cleavage system protein H [KO:K02437]
C3943_22740  glycerate kinase [KO:K00865] [EC:2.7.1.165]
C3943_05415  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
C3943_02005  hypothetical protein [KO:K07130] [EC:3.5.1.9]
C3943_01120  acetamidase [KO:K01455] [EC:3.5.1.49]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
lyb00010  Glycolysis / Gluconeogenesis
lyb00020  Citrate cycle (TCA cycle)
lyb00030  Pentose phosphate pathway
lyb00071  Fatty acid degradation
lyb00230  Purine metabolism
lyb00250  Alanine, aspartate and glutamate metabolism
lyb00260  Glycine, serine and threonine metabolism
lyb00620  Pyruvate metabolism
lyb00710  Carbon fixation by Calvin cycle
lyb00750  Vitamin B6 metabolism
lyb00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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