KEGG   PATHWAY: malb00020
Entry
malb00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Monopterus albus (swamp eel)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
malb00020  Citrate cycle (TCA cycle)
malb00020

Module
malb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:malb00020]
malb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:malb00020]
malb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:malb00020]
malb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:malb00020]
malb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:malb00020]
Other DBs
GO: 0006099
Organism
Monopterus albus (swamp eel) [GN:malb]
Gene
109970324  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
109963029  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
109964230  acly; ATP-citrate synthase isoform X1 [KO:K01648] [EC:2.3.3.8]
109952657  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109957264  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
109971836  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
109967183  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
109971574  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
109971637  idh1; isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
109961643  idh3a; isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
109956184  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
109972176  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
109957287  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
109952363  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
109955039  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
109970033  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
109956444  dld; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
109961292  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109956210  suclg2; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109972596  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109958516  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109964508  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
109974510  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial isoform X1 [KO:K00236]
109971048  sdhd; succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial [KO:K00237]
109964056  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
109961149  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
109952294  mdh1; malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109958229  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
109965818  pc; pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
109953010  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
109972399  pck1; phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
109959451  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
109966361  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
109952496  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
malb00010  Glycolysis / Gluconeogenesis
malb00053  Ascorbate and aldarate metabolism
malb00061  Fatty acid biosynthesis
malb00062  Fatty acid elongation
malb00071  Fatty acid degradation
malb00190  Oxidative phosphorylation
malb00220  Arginine biosynthesis
malb00250  Alanine, aspartate and glutamate metabolism
malb00280  Valine, leucine and isoleucine degradation
malb00350  Tyrosine metabolism
malb00470  D-Amino acid metabolism
malb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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