KEGG   PATHWAY: mall00020
Entry
mall00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinobacter alkaliphilus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mall00020  Citrate cycle (TCA cycle)
mall00020

Module
mall_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mall00020]
mall_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mall00020]
mall_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mall00020]
mall_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mall00020]
Other DBs
GO: 0006099
Organism
Marinobacter alkaliphilus [GN:mall]
Gene
PBN92_10865  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
PBN92_18595  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
PBN92_08085  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PBN92_00460  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PBN92_10840  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PBN92_10835  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
PBN92_17650  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBN92_10830  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
PBN92_10820  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
PBN92_10825  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
PBN92_10850  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PBN92_15605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PBN92_10845  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PBN92_10860  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PBN92_10855  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PBN92_06365  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
PBN92_16995  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PBN92_16945  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
PBN92_18980  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
PBN92_16665  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
PBN92_16660  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
PBN92_18375  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mall00010  Glycolysis / Gluconeogenesis
mall00053  Ascorbate and aldarate metabolism
mall00061  Fatty acid biosynthesis
mall00071  Fatty acid degradation
mall00190  Oxidative phosphorylation
mall00220  Arginine biosynthesis
mall00250  Alanine, aspartate and glutamate metabolism
mall00280  Valine, leucine and isoleucine degradation
mall00350  Tyrosine metabolism
mall00470  D-Amino acid metabolism
mall00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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