KEGG   PATHWAY: manu00020
Entry
manu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Misgurnus anguillicaudatus (oriental weatherfish)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
manu00020  Citrate cycle (TCA cycle)
manu00020

Module
manu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:manu00020]
manu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:manu00020]
manu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:manu00020]
manu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:manu00020]
manu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:manu00020]
Other DBs
GO: 0006099
Organism
Misgurnus anguillicaudatus (oriental weatherfish) [GN:manu]
Gene
129430518  cs; citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
129436232  aclya; ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
129449918  aco1; cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
129420676  aco2; aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
129452454  isocitrate dehydrogenase [NADP] cytoplasmic isoform X1 [KO:K00031] [EC:1.1.1.42]
129452455  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
129419010  idh2; isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
129431107  idh3g; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
129423636  idh3b; isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
129433873  idh3a; LOW QUALITY PROTEIN: isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
129430272  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
129413560  ogdha; oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
129446490  ogdhb; 2-oxoglutarate dehydrogenase complex component E1 isoform X1 [KO:K00164] [EC:1.2.4.2]
129417889  dlst; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial [KO:K00658] [EC:2.3.1.61]
129434140  dldh; dihydrolipoyl dehydrogenase, mitochondrial [KO:K00382] [EC:1.8.1.4]
129444257  suclg1; succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
129449870  sucla2; succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129427426  suclg2; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
129456048  sdha; succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
129453230  sdhb; succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial [KO:K00235] [EC:1.3.5.1]
129430439  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
129441400  sdhc; succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
129437968  sdhdb; succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial isoform X1 [KO:K00237]
129421317  fh; fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
129444105  mdh1aa; malate dehydrogenase 1Aa, NAD (soluble) isoform X1 [KO:K00025] [EC:1.1.1.37]
129417666  mdh1ab; malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
129446810  mdh2; malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
129448867  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
129448933  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
129423072  pcxa; pyruvate carboxylase a [KO:K01958] [EC:6.4.1.1]
129426093  pck2; phosphoenolpyruvate carboxykinase [GTP], mitochondrial [KO:K01596] [EC:4.1.1.32]
129439985  pdha1a; pyruvate dehydrogenase E1 subunit alpha 1a isoform X1 [KO:K00161] [EC:1.2.4.1]
129453699  pdhb; pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
129423892  dlat; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
manu00010  Glycolysis / Gluconeogenesis
manu00053  Ascorbate and aldarate metabolism
manu00061  Fatty acid biosynthesis
manu00062  Fatty acid elongation
manu00071  Fatty acid degradation
manu00190  Oxidative phosphorylation
manu00220  Arginine biosynthesis
manu00250  Alanine, aspartate and glutamate metabolism
manu00280  Valine, leucine and isoleucine degradation
manu00350  Tyrosine metabolism
manu00470  D-Amino acid metabolism
manu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system