KEGG   PATHWAY: maqa00020
Entry
maqa00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinilongibacter aquaticus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maqa00020  Citrate cycle (TCA cycle)
maqa00020

Module
maqa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:maqa00020]
maqa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maqa00020]
Other DBs
GO: 0006099
Organism
Marinilongibacter aquaticus [GN:maqa]
Gene
LAG90_05415  citrate synthase [KO:K01647] [EC:2.3.3.1]
LAG90_18775  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LAG90_11165  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LAG90_07545  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LAG90_07550  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LAG90_00390  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
LAG90_07555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LAG90_11980  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LAG90_06465  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LAG90_01740  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LAG90_13395  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LAG90_13390  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LAG90_01930  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LAG90_07090  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LAG90_12140  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LAG90_11445  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LAG90_18720  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LAG90_19425  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maqa00010  Glycolysis / Gluconeogenesis
maqa00053  Ascorbate and aldarate metabolism
maqa00061  Fatty acid biosynthesis
maqa00071  Fatty acid degradation
maqa00190  Oxidative phosphorylation
maqa00220  Arginine biosynthesis
maqa00250  Alanine, aspartate and glutamate metabolism
maqa00280  Valine, leucine and isoleucine degradation
maqa00350  Tyrosine metabolism
maqa00470  D-Amino acid metabolism
maqa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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