KEGG   PATHWAY: maqe00020
Entry
maqe00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methanofollis aquaemaris
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maqe00020  Citrate cycle (TCA cycle)
maqe00020

Module
maqe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maqe00020]
Other DBs
GO: 0006099
Organism
Methanofollis aquaemaris [GN:maqe]
Gene
RJ40_09140  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
RJ40_11675  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RJ40_04455  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RJ40_04460  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RJ40_11670  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RJ40_11665  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
RJ40_11680  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
RJ40_11655  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
RJ40_11660  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
RJ40_02300  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
RJ40_11690  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
RJ40_11685  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
RJ40_07735  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RJ40_11410  lactate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RJ40_00675  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
RJ40_00670  oadA; oxaloacetate decarboxylase subunit alpha [KO:K01960] [EC:6.4.1.1]
RJ40_10880  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
RJ40_07295  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
RJ40_07290  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
RJ40_10885  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
RJ40_10870  pyruvate ferredoxin oxidoreductase subunit gamma [KO:K00172] [EC:1.2.7.1]
RJ40_07300  pyruvate ferredoxin oxidoreductase [KO:K00189] [EC:1.2.7.7 1.2.7.1]
RJ40_07305  ferredoxin [KO:K00171] [EC:1.2.7.1]
RJ40_10875  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maqe00010  Glycolysis / Gluconeogenesis
maqe00061  Fatty acid biosynthesis
maqe00071  Fatty acid degradation
maqe00190  Oxidative phosphorylation
maqe00220  Arginine biosynthesis
maqe00250  Alanine, aspartate and glutamate metabolism
maqe00280  Valine, leucine and isoleucine degradation
maqe00350  Tyrosine metabolism
maqe00470  D-Amino acid metabolism
maqe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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