KEGG   PATHWAY: maqi00020
Entry
maqi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Flagellimonas marinaquae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
maqi00020  Citrate cycle (TCA cycle)
maqi00020

Module
maqi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:maqi00020]
maqi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:maqi00020]
maqi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:maqi00020]
maqi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:maqi00020]
maqi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:maqi00020]
Other DBs
GO: 0006099
Organism
Flagellimonas marinaquae [GN:maqi]
Gene
LDL77_04965  citrate synthase [KO:K01647] [EC:2.3.3.1]
LDL77_02620  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LDL77_13730  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LDL77_00070  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LDL77_11540  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LDL77_11545  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LDL77_13635  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
LDL77_01290  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LDL77_14455  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LDL77_18940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LDL77_18045  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LDL77_03410  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LDL77_09410  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LDL77_09405  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LDL77_09415  succinate dehydrogenase cytochrome b subunit [KO:K00241]
LDL77_17565  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LDL77_04185  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LDL77_02850  accC; acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
LDL77_06990  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LDL77_11490  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LDL77_05395  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LDL77_12325  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LDL77_05390  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
maqi00010  Glycolysis / Gluconeogenesis
maqi00053  Ascorbate and aldarate metabolism
maqi00061  Fatty acid biosynthesis
maqi00071  Fatty acid degradation
maqi00190  Oxidative phosphorylation
maqi00220  Arginine biosynthesis
maqi00250  Alanine, aspartate and glutamate metabolism
maqi00280  Valine, leucine and isoleucine degradation
maqi00350  Tyrosine metabolism
maqi00470  D-Amino acid metabolism
maqi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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