KEGG   PATHWAY: marj00020
Entry
marj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marinobacter sp. JH2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
marj00020  Citrate cycle (TCA cycle)
marj00020

Module
marj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:marj00020]
marj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:marj00020]
marj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:marj00020]
marj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:marj00020]
Other DBs
GO: 0006099
Organism
Marinobacter sp. JH2 [GN:marj]
Gene
MARI_09020  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MARI_29960  acnA; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
MARI_15210  acnB; aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
MARI_27120  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MARI_09070  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
MARI_09080  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
MARI_09090  lpd; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MARI_31720  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MARI_09110  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MARI_09100  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MARI_09050  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MARI_09060  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MARI_09030  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
MARI_09040  sdhD; succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
MARI_17080  fumB; fumarate hydratase class I, anaerobic [KO:K01676] [EC:4.2.1.2]
MARI_32680  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MARI_10600  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
MARI_32760  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MARI_03710  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01959] [EC:6.4.1.1]
MARI_03700  cfiA; 2-oxoglutarate carboxylase large subunit [KO:K01960] [EC:6.4.1.1]
MARI_29260  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
MARI_33440  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MARI_33450  aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
marj00010  Glycolysis / Gluconeogenesis
marj00053  Ascorbate and aldarate metabolism
marj00061  Fatty acid biosynthesis
marj00071  Fatty acid degradation
marj00190  Oxidative phosphorylation
marj00220  Arginine biosynthesis
marj00250  Alanine, aspartate and glutamate metabolism
marj00280  Valine, leucine and isoleucine degradation
marj00350  Tyrosine metabolism
marj00470  D-Amino acid metabolism
marj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system