KEGG   PATHWAY: marx00020
Entry
marx00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Marixanthomonas sp. SCSIO 43207
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
marx00020  Citrate cycle (TCA cycle)
marx00020

Module
marx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:marx00020]
marx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:marx00020]
marx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:marx00020]
marx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:marx00020]
marx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:marx00020]
Other DBs
GO: 0006099
Organism
Marixanthomonas sp. SCSIO 43207 [GN:marx]
Gene
INR76_07335  citrate synthase [KO:K01647] [EC:2.3.3.1]
INR76_11010  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
INR76_12965  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
INR76_08820  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
INR76_02940  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
INR76_02935  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
INR76_06725  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
INR76_08600  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
INR76_10060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
INR76_10350  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
INR76_11405  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
INR76_13500  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
INR76_03215  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
INR76_03210  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
INR76_03220  succinate dehydrogenase cytochrome b subunit [KO:K00241]
INR76_11835  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
INR76_07515  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
INR76_02820  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
INR76_05170  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
INR76_06950  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
INR76_01975  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
INR76_06955  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
marx00010  Glycolysis / Gluconeogenesis
marx00053  Ascorbate and aldarate metabolism
marx00061  Fatty acid biosynthesis
marx00071  Fatty acid degradation
marx00190  Oxidative phosphorylation
marx00220  Arginine biosynthesis
marx00250  Alanine, aspartate and glutamate metabolism
marx00280  Valine, leucine and isoleucine degradation
marx00350  Tyrosine metabolism
marx00470  D-Amino acid metabolism
marx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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