KEGG   PATHWAY: masi00020
Entry
masi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Myxocyprinus asiaticus (Chinese sucker)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
masi00020  Citrate cycle (TCA cycle)
masi00020

Module
masi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:masi00020]
masi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:masi00020]
masi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:masi00020]
masi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:masi00020]
masi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:masi00020]
Other DBs
GO: 0006099
Organism
Myxocyprinus asiaticus (Chinese sucker) [GN:masi]
Gene
127419305  citrate synthase, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
127419912  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
127450487  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
127451699  ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
127450821  cytoplasmic aconitate hydratase [KO:K01681] [EC:4.2.1.3]
127427243  aconitate hydratase, mitochondrial isoform X1 [KO:K01681] [EC:4.2.1.3]
127447314  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
127423324  aconitate hydratase, mitochondrial-like isoform X1 [KO:K01681] [EC:4.2.1.3]
127455934  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
127447130  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
127448122  isocitrate dehydrogenase [NADP] cytoplasmic-like isoform X1 [KO:K00031] [EC:1.1.1.42]
127416996  isocitrate dehydrogenase [NADP], mitochondrial [KO:K00031] [EC:1.1.1.42]
127437202  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127431235  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
127420095  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127428756  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
127436139  isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
127424529  oxoglutarate (alpha-ketoglutarate) dehydrogenase a (lipoamide) isoform X1 [KO:K00164] [EC:1.2.4.2]
127414243  2-oxoglutarate dehydrogenase-like, mitochondrial isoform X1 [KO:K00164] [EC:1.2.4.2]
127414636  2-oxoglutarate dehydrogenase complex component E1-like isoform X1 [KO:K00164] [EC:1.2.4.2]
127433896  2-oxoglutarate dehydrogenase complex component E1 [KO:K00164] [EC:1.2.4.2]
127411786  LOW QUALITY PROTEIN: 2-oxoglutarate dehydrogenase-like, mitochondrial [KO:K00164] [EC:1.2.4.2]
127455380  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
127410965  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
127437741  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
127436342  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
127443962  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127444594  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like [KO:K01899] [EC:6.2.1.4 6.2.1.5]
127426279  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial isoform X1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127446476  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127428066  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127448932  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
127425609  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
127420996  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
127419049  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127420096  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
127438431  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
127441002  succinate dehydrogenase cytochrome b560 subunit, mitochondrial [KO:K00236]
127442742  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
127425078  succinate dehydrogenase [ubiquinone] cytochrome b small subunit A, mitochondrial isoform X1 [KO:K00237]
127421782  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
127429759  succinate dehydrogenase [ubiquinone] cytochrome b small subunit B, mitochondrial-like [KO:K00237]
127426657  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
127423520  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
127444059  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
127445258  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
127410668  malate dehydrogenase 1Ab, NAD (soluble) [KO:K00025] [EC:1.1.1.37]
127454818  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
127432930  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
127433934  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
127430716  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
127441263  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
127416517  pyruvate carboxylase, mitochondrial-like [KO:K01958] [EC:6.4.1.1]
127429062  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
127431425  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
127445774  phosphoenolpyruvate carboxykinase, cytosolic [GTP] [KO:K01596] [EC:4.1.1.32]
127434301  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like [KO:K01596] [EC:4.1.1.32]
127419899  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
127438622  pyruvate dehydrogenase E1 component subunit alpha, mitochondrial-like isoform X1 [KO:K00161] [EC:1.2.4.1]
127437956  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
127439249  pyruvate dehydrogenase E1 component subunit beta, mitochondrial [KO:K00162] [EC:1.2.4.1]
127431369  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
127428995  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
masi00010  Glycolysis / Gluconeogenesis
masi00053  Ascorbate and aldarate metabolism
masi00061  Fatty acid biosynthesis
masi00062  Fatty acid elongation
masi00071  Fatty acid degradation
masi00190  Oxidative phosphorylation
masi00220  Arginine biosynthesis
masi00250  Alanine, aspartate and glutamate metabolism
masi00280  Valine, leucine and isoleucine degradation
masi00350  Tyrosine metabolism
masi00470  D-Amino acid metabolism
masi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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