KEGG   PATHWAY: mbok00020
Entry
mbok00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium boenickei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbok00020  Citrate cycle (TCA cycle)
mbok00020

Module
mbok_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbok00020]
mbok_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbok00020]
mbok_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbok00020]
mbok_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbok00020]
mbok_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbok00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium boenickei [GN:mbok]
Gene
MBOE_22660  citrate synthase [KO:K01647] [EC:2.3.3.1]
MBOE_22700  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MBOE_32930  gltA1; citrate synthase [KO:K01647] [EC:2.3.3.1]
MBOE_01600  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MBOE_45050  acnA; aconitate hydratase A [KO:K01681] [EC:4.2.1.3]
MBOE_57500  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MBOE_29080  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MBOE_02810  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MBOE_18470  pdhD; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MBOE_33720  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MBOE_33730  orB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MBOE_24270  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MBOE_24260  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MBOE_15770  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MBOE_57160  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MBOE_15760  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MBOE_57170  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MBOE_57140  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MBOE_57150  succinate dehydrogenase [KO:K00242]
MBOE_23110  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
MBOE_23100  hypothetical protein [KO:K00245] [EC:1.3.5.1]
MBOE_23090  frdC; fumarate reductase subunit C [KO:K00246]
MBOE_23080  frdD; fumarate reductase subunit D [KO:K00247]
MBOE_27150  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MBOE_56300  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MBOE_49610  mqo; putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MBOE_32940  pyc_1; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MBOE_51290  pyc_2; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MBOE_14280  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MBOE_36040  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MBOE_36450  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbok00010  Glycolysis / Gluconeogenesis
mbok00053  Ascorbate and aldarate metabolism
mbok00061  Fatty acid biosynthesis
mbok00071  Fatty acid degradation
mbok00190  Oxidative phosphorylation
mbok00220  Arginine biosynthesis
mbok00250  Alanine, aspartate and glutamate metabolism
mbok00280  Valine, leucine and isoleucine degradation
mbok00350  Tyrosine metabolism
mbok00470  D-Amino acid metabolism
mbok00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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