KEGG   PATHWAY: mbx00020
Entry
mbx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis variant bovis BCG ATCC 35743
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mbx00020  Citrate cycle (TCA cycle)
mbx00020

Module
mbx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mbx00020]
mbx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mbx00020]
mbx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mbx00020]
mbx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mbx00020]
mbx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mbx00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis variant bovis BCG ATCC 35743 [GN:mbx]
Gene
BCGT_0697  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BCGT_0704  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BCGT_0959  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BCGT_1313  Aconitate hydratase, 2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
BCGT_3205  Isocitrate dehydrogenase [nadp] [KO:K00031] [EC:1.1.1.42]
BCGT_3859  Isocitrate dehydrogenase [nadp] [KO:K00031] [EC:1.1.1.42]
BCGT_1081  Dihydrolipoamide succinyltransferase component (E2/E1) of 2-oxoglutarate dehydrogenase complex [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
BCGT_0236  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCGT_2287  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCGT_2286  2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCGT_0765  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
BCGT_0764  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
BCGT_0013  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCGT_3182  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BCGT_0012  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCGT_3183  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BCGT_3180  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BCGT_3181  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BCGT_1380  Succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
BCGT_1381  Succinate dehydrogenase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
BCGT_1382  Fumarate reductase subunit D [KO:K00247]
BCGT_0927  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BCGT_1072  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCGT_2684  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCGT_2805  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
BCGT_4014  Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BCGT_2064  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BCGT_2032  Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mbx00010  Glycolysis / Gluconeogenesis
mbx00053  Ascorbate and aldarate metabolism
mbx00061  Fatty acid biosynthesis
mbx00071  Fatty acid degradation
mbx00190  Oxidative phosphorylation
mbx00220  Arginine biosynthesis
mbx00250  Alanine, aspartate and glutamate metabolism
mbx00280  Valine, leucine and isoleucine degradation
mbx00350  Tyrosine metabolism
mbx00470  D-Amino acid metabolism
mbx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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