KEGG   PATHWAY: mcix00020
Entry
mcix00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Melitaea cinxia (Glanville fritillary)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcix00020  Citrate cycle (TCA cycle)
mcix00020

Module
mcix_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcix00020]
mcix_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcix00020]
mcix_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcix00020]
mcix_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcix00020]
mcix_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcix00020]
Other DBs
GO: 0006099
Organism
Melitaea cinxia (Glanville fritillary) [GN:mcix]
Gene
123669033  probable citrate synthase 2, mitochondrial [KO:K01647] [EC:2.3.3.1]
123666766  ATP-citrate synthase [KO:K01648] [EC:2.3.3.8]
123666132  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
123656987  probable aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
123659356  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
123653618  isocitrate dehydrogenase [NADP] cytoplasmic [KO:K00031] [EC:1.1.1.42]
123668208  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
123659059  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
123665077  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial [KO:K00030] [EC:1.1.1.41]
123654370  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
123655231  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
123667169  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
123654288  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
123663820  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
123660636  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123664720  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
123668513  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
123660319  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
123668773  succinate dehydrogenase [ubiquinone] iron-sulfur subunit-like [KO:K00235] [EC:1.3.5.1]
123665104  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
123668512  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
123658449  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
123662265  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
123656965  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
123660788  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
123658042  malate dehydrogenase 3, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
123655988  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
123670274  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
123670275  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
123663187  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
123655889  malate dehydrogenase-like [KO:K00026] [EC:1.1.1.37]
123656440  LOW QUALITY PROTEIN: malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
123661020  pyruvate carboxylase, mitochondrial [KO:K01958] [EC:6.4.1.1]
123665564  phosphoenolpyruvate carboxykinase [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
123662965  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial isoform X1 [KO:K00161] [EC:1.2.4.1]
123657560  pyruvate dehydrogenase E1 component subunit beta, mitochondrial isoform X1 [KO:K00162] [EC:1.2.4.1]
123660127  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcix00010  Glycolysis / Gluconeogenesis
mcix00053  Ascorbate and aldarate metabolism
mcix00061  Fatty acid biosynthesis
mcix00062  Fatty acid elongation
mcix00071  Fatty acid degradation
mcix00190  Oxidative phosphorylation
mcix00220  Arginine biosynthesis
mcix00250  Alanine, aspartate and glutamate metabolism
mcix00280  Valine, leucine and isoleucine degradation
mcix00350  Tyrosine metabolism
mcix00470  D-Amino acid metabolism
mcix00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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