KEGG   PATHWAY: mcl00020
Entry
mcl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Macrococcoides caseolyticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcl00020  Citrate cycle (TCA cycle)
mcl00020

Module
mcl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcl00020]
mcl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcl00020]
mcl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcl00020]
mcl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcl00020]
mcl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcl00020]
Other DBs
GO: 0006099
Organism
Macrococcoides caseolyticum [GN:mcl]
Gene
MCCL_1362  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
MCCL_1008  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
MCCL_1361  citC; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
MCCL_1064  2-oxoglutarate dehydrogenase, E1 component homolog [KO:K00164] [EC:1.2.4.2]
MCCL_1063  odhB; dihydrolipoamide acetyltransferase [KO:K00658] [EC:2.3.1.61]
MCCL_0713  pdhD; dihydrolipoamide dehydrogenase subunit E3 [KO:K00382] [EC:1.8.1.4]
MCCL_0878  porA; 2-oxoacid ferredoxin oxidoreductase alpha subunit homolog [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MCCL_0879  porB; 2-oxoacid ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MCCL_0832  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
MCCL_0831  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
MCCL_1318  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MCCL_1317  sdhB; succinate dehydrogenase iron-sulfur protein subunit [KO:K00240] [EC:1.3.5.1]
MCCL_1319  sdhC; succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
MCCL_1577  fumC; fumarate hydratase, class-II [KO:K01679] [EC:4.2.1.2]
MCCL_1360  malate dehydrogenase homolog [KO:K00024] [EC:1.1.1.37]
MCCL_0363  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MCCL_0387  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
MCCL_0729  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MCCL_1499  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
MCCL_0710  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
MCCL_0711  pdhB; pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
MCCL_0712  pdhC; dihydrolipoamide acetyltransferase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcl00010  Glycolysis / Gluconeogenesis
mcl00053  Ascorbate and aldarate metabolism
mcl00061  Fatty acid biosynthesis
mcl00062  Fatty acid elongation
mcl00071  Fatty acid degradation
mcl00190  Oxidative phosphorylation
mcl00220  Arginine biosynthesis
mcl00250  Alanine, aspartate and glutamate metabolism
mcl00280  Valine, leucine and isoleucine degradation
mcl00350  Tyrosine metabolism
mcl00470  D-Amino acid metabolism
mcl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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