KEGG   PATHWAY: mcn00020
Entry
mcn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Metallosphaera cuprina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcn00020  Citrate cycle (TCA cycle)
mcn00020

Module
mcn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcn00020]
mcn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcn00020]
mcn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcn00020]
mcn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcn00020]
mcn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcn00020]
Other DBs
GO: 0006099
Organism
Metallosphaera cuprina [GN:mcn]
Gene
Mcup_1787  citrate synthase [KO:K01647] [EC:2.3.3.1]
Mcup_0716  citrate synthase [KO:K01659] [EC:2.3.3.5]
Mcup_0752  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Mcup_1421  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Mcup_0313  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mcup_0278  pyridine nucleotide-disulfide oxidoreductase dimerization region [KO:K00382] [EC:1.8.1.4]
Mcup_0680  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mcup_1163  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Mcup_1569  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Mcup_1570  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Mcup_0651  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Mcup_0650  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Mcup_1395  succinate dehydrogenase flavoprotein subunit A [KO:K00239] [EC:1.3.5.1]
Mcup_1394  succinate dehydrogenase iron-sulfur subunit B [KO:K00240] [EC:1.3.5.1]
Mcup_1393  succinate dehydrogenase subunit C [KO:K00241]
Mcup_1392  succinate dehydrogenase subunit D [KO:K18859]
Mcup_0749  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Mcup_1632  malate dehydrogenase(NAD+) [KO:K00024] [EC:1.1.1.37]
Mcup_0741  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Mcup_1759  pyruvate ferredoxin/flavodoxin oxidoreductase domain-containing protein [KO:K00169] [EC:1.2.7.1]
Mcup_1587  putative pyruvate: ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
Mcup_1758  pyruvate ferredoxin oxidoreductase subunit beta [KO:K00170] [EC:1.2.7.1]
Mcup_1586  putative pyruvate: ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
Mcup_1589  putative pyruvate: ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mcup_1761  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Mcup_1760  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Mcup_1588  putative pyruvate: ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcn00010  Glycolysis / Gluconeogenesis
mcn00061  Fatty acid biosynthesis
mcn00071  Fatty acid degradation
mcn00190  Oxidative phosphorylation
mcn00220  Arginine biosynthesis
mcn00250  Alanine, aspartate and glutamate metabolism
mcn00280  Valine, leucine and isoleucine degradation
mcn00350  Tyrosine metabolism
mcn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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