KEGG   PATHWAY: mcv00020
Entry
mcv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium canettii CIPT 140070008
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mcv00020  Citrate cycle (TCA cycle)
mcv00020

Module
mcv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mcv00020]
mcv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mcv00020]
mcv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mcv00020]
mcv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mcv00020]
mcv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mcv00020]
Other DBs
GO: 0006099
Organism
Mycobacterium canettii CIPT 140070008 [GN:mcv]
Gene
BN43_30193  gltA; Putative citrate synthase I GltA I [KO:K01647] [EC:2.3.3.1]
BN43_20346  citA; Putative citrate synthase II CitA [KO:K01647] [EC:2.3.3.1]
BN43_20354  gltA; Putative citrate synthase I GltA2 [KO:K01647] [EC:2.3.3.1]
BN43_30588  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BN43_10079  icd; Putative isocitrate dehydrogenase [NADP] Icd2 (oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP) [KO:K00031] [EC:1.1.1.42]
BN43_60362  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BN43_30323  kgd; Oxoglutarate dehydrogenase SucA (alpha-ketoglutarate dehydrogenase) [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
BN43_10501  lpd; Dihydrolipoamide dehydrogenase Lpd (lipoamide reductase (NADH)) (lipoyl dehydrogenase) (dihydrolipoyl dehydrogenase) (diaphorase) [KO:K00382] [EC:1.8.1.4]
BN43_40116  Putative oxidoreductase (alpha subunit) [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BN43_40115  Putative oxidoreductase (beta subunit) [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BN43_20429  sucD; Putative succinyl-CoA synthetase (alpha chain) SucD (SCS-alpha) [KO:K01902] [EC:6.2.1.5]
BN43_20428  sucC; Putative succinyl-CoA synthetase (beta chain) SucC (SCS-beta) [KO:K01903] [EC:6.2.1.5]
BN43_10280  Putative succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase) [KO:K00239] [EC:1.3.5.1]
BN43_60337  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BN43_10279  Putative succinate dehydrogenase [iron-sulfur subunit] (succinic dehydrogenase) [KO:K00240] [EC:1.3.5.1]
BN43_60338  sdhB; Putative succinate dehydrogenase (iron-sulphur protein subunit) SdhB (succinic dehydrogenase) (fumarate reductase) (fumarate dehydrogenase) (fumaric hydrogenase) [KO:K00240] [EC:1.3.5.1]
BN43_60335  sdhC; Putative succinate dehydrogenase (cytochrome B-556 subunit) SdhC (Succinic dehydrogenase) (Fumarate reductase) (Fumarate dehydrogenase) (Fumaric hydrogenase) [KO:K00241]
BN43_60336  sdhD; Putative succinate dehydrogenase (hydrophobic membrane anchor subunit) SdhD (Succinic dehydrogenase) (Fumarate reductase) (Fumarate dehydrogenase) (Fumaric hydrogenase) [KO:K00242]
BN43_30679  frdA; Putative fumarate reductase [flavoprotein subunit] FrdA (fumarate dehydrogenase) (fumaric hydrogenase) [KO:K00244] [EC:1.3.5.1]
BN43_30680  frdB; Fumarate reductase (anaerobic), Fe-S subunit [KO:K00245] [EC:1.3.5.1]
BN43_30681  frdC; Putative fumarate reductase [membrane anchor subunit] FrdC (fumarate dehydrogenase) (fumaric hydrogenase) [KO:K00246]
BN43_30682  frdD; Fumarate reductase subunit D [KO:K00247]
BN43_30154  fum; Putative fumarase Fum (fumarate hydratase) [KO:K01679] [EC:4.2.1.2]
BN43_30314  mdh; Putative malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
BN43_40542  mqo; Putative malate:quinone oxidoreductase Mqo (malate dehydrogenase [acceptor]) [KO:K00116] [EC:1.1.5.4]
BN43_40676  pca; Putative pyruvate carboxylase Pca (pyruvic carboxylase) [KO:K01958] [EC:6.4.1.1]
BN43_10239  Conserved membrane protein of unknown function [KO:K01596] [EC:4.1.1.32]
BN43_31484  aceE; Putative pyruvate dehydrogenase E1 component AceE (pyruvate decarboxylase) (pyruvate dehydrogenase) (pyruvic dehydrogenase) [KO:K00163] [EC:1.2.4.1]
BN43_31450  dlaT; DlaT, dihydrolipoamide acyltransferase, E2 component of pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mcv00010  Glycolysis / Gluconeogenesis
mcv00053  Ascorbate and aldarate metabolism
mcv00061  Fatty acid biosynthesis
mcv00071  Fatty acid degradation
mcv00190  Oxidative phosphorylation
mcv00220  Arginine biosynthesis
mcv00250  Alanine, aspartate and glutamate metabolism
mcv00280  Valine, leucine and isoleucine degradation
mcv00350  Tyrosine metabolism
mcv00470  D-Amino acid metabolism
mcv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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