KEGG   PATHWAY: mdg00030
Entry
mdg00030                    Pathway                                
Name
Pentose phosphate pathway - Metabacillus dongyingensis
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mdg00030  Pentose phosphate pathway
mdg00030

Module
mdg_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mdg00030]
mdg_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mdg00030]
mdg_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mdg00030]
mdg_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mdg00030]
mdg_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:mdg00030]
mdg_M00580  Pentose phosphate pathway, archaea, fructose 6P => ribose 5P [PATH:mdg00030]
Other DBs
GO: 0006098
Organism
Metabacillus dongyingensis [GN:mdg]
Gene
K8L98_20970  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
K8L98_17105  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
K8L98_08010  lactonase family protein [KO:K07404] [EC:3.1.1.31]
K8L98_17120  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K8L98_22255  gnd; decarboxylating 6-phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
K8L98_10775  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
K8L98_12130  tkt; transketolase [KO:K00615] [EC:2.2.1.1]
K8L98_23865  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
K8L98_13055  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
K8L98_11960  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
K8L98_23780  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
K8L98_13980  hxlA; 3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
K8L98_15450  orotidine 5'-phosphate decarboxylase [KO:K08093] [EC:4.1.2.43]
K8L98_13985  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
K8L98_15445  hxlB; 6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
K8L98_17940  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
K8L98_11965  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
K8L98_04150  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
K8L98_16905  deoB; phosphopentomutase [KO:K01839] [EC:5.4.2.7]
K8L98_19320  phosphopentomutase [KO:K01839] [EC:5.4.2.7]
K8L98_04055  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
K8L98_00340  ribose-phosphate diphosphokinase [KO:K00948] [EC:2.7.6.1]
K8L98_15460  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K8L98_02240  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K8L98_13840  glucose-1-dehydrogenase [KO:K00034] [EC:1.1.1.47]
K8L98_22250  gntK; gluconokinase [KO:K25031] [EC:2.7.1.12]
K8L98_15470  sugar kinase [KO:K00874] [EC:2.7.1.45]
K8L98_02235  sugar kinase [KO:K00874] [EC:2.7.1.45]
K8L98_02330  sugar kinase [KO:K00874] [EC:2.7.1.45]
K8L98_23870  fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
K8L98_23855  glpX; class II fructose-bisphosphatase [KO:K02446] [EC:3.1.3.11]
K8L98_19015  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
K8L98_22245  6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
mdg00010  Glycolysis / Gluconeogenesis
mdg00040  Pentose and glucuronate interconversions
mdg00052  Galactose metabolism
mdg00230  Purine metabolism
mdg00240  Pyrimidine metabolism
mdg00340  Histidine metabolism
mdg00630  Glyoxylate and dicarboxylate metabolism
mdg00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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