KEGG   PATHWAY: mdo00020
Entry
mdo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Monodelphis domestica (gray short-tailed opossum)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mdo00020  Citrate cycle (TCA cycle)
mdo00020

Module
mdo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mdo00020]
mdo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mdo00020]
mdo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mdo00020]
Other DBs
GO: 0006099
Organism
Monodelphis domestica (gray short-tailed opossum) [GN:mdo]
Gene
100011977  ACLY; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
100028766  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
100016997  ACO1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
751083  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
100015156  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
100012825  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
100027983  IDH3G; isocitrate dehydrogenase 3 (NAD(+)) gamma [KO:K00030] [EC:1.1.1.41]
100017654  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
100014951  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
100617256  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
100018634  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
100010414  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
100030644  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
100019343  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
100029052  SUCLA2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
751085  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
751078  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
100032780  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
100032261  SDHD; succinate dehydrogenase complex subunit D [KO:K00237]
100027739  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
100031872  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
100018146  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
100015028  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
100030700  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
100027540  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
100014220  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
100014556  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
100032278  DLAT; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mdo00010  Glycolysis / Gluconeogenesis
mdo00053  Ascorbate and aldarate metabolism
mdo00061  Fatty acid biosynthesis
mdo00062  Fatty acid elongation
mdo00071  Fatty acid degradation
mdo00190  Oxidative phosphorylation
mdo00220  Arginine biosynthesis
mdo00250  Alanine, aspartate and glutamate metabolism
mdo00280  Valine, leucine and isoleucine degradation
mdo00350  Tyrosine metabolism
mdo00470  D-Amino acid metabolism
mdo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system