KEGG   PATHWAY: mdx00030
Entry
mdx00030                    Pathway                                
Name
Pentose phosphate pathway - Mycobacterium dioxanotrophicus
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mdx00030  Pentose phosphate pathway
mdx00030

Module
mdx_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:mdx00030]
mdx_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:mdx00030]
mdx_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:mdx00030]
mdx_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:mdx00030]
mdx_M00008  Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:mdx00030]
mdx_M00345  Formaldehyde assimilation, ribulose monophosphate pathway [PATH:mdx00030]
Other DBs
GO: 0006098
Organism
Mycobacterium dioxanotrophicus [GN:mdx]
Gene
BTO20_28995  glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
BTO20_03970  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BTO20_18490  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BTO20_03350  glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
BTO20_18500  6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
BTO20_04000  6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BTO20_36455  6-phosphogluconate dehydrogenase (decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BTO20_03295  phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) [KO:K00033] [EC:1.1.1.44 1.1.1.343]
BTO20_03375  ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
BTO20_31950  transketolase [KO:K00615] [EC:2.2.1.1]
BTO20_31955  transketolase [KO:K00615] [EC:2.2.1.1]
BTO20_18480  transketolase [KO:K00615] [EC:2.2.1.1]
BTO20_18645  transketolase [KO:K00615] [EC:2.2.1.1]
BTO20_18650  transketolase [KO:K00615] [EC:2.2.1.1]
BTO20_03365  transketolase [KO:K00615] [EC:2.2.1.1]
BTO20_18485  transaldolase [KO:K00616] [EC:2.2.1.2]
BTO20_03370  transaldolase [KO:K00616] [EC:2.2.1.2]
BTO20_13885  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
BTO20_03380  ribose-5-phosphate isomerase [KO:K01808] [EC:5.3.1.6]
BTO20_30245  hypothetical protein [KO:K08093] [EC:4.1.2.43]
BTO20_03345  3-hexulose-6-phosphate synthase [KO:K08093] [EC:4.1.2.43]
BTO20_30250  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
BTO20_03340  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
BTO20_03435  6-phospho-3-hexuloisomerase [KO:K08094] [EC:5.3.1.27]
BTO20_15655  phosphoketolase [KO:K01621] [EC:4.1.2.9 4.1.2.22]
BTO20_04940  deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
BTO20_26495  ribokinase [KO:K00852] [EC:2.7.1.15]
BTO20_12000  ribokinase [KO:K00852] [EC:2.7.1.15]
BTO20_24555  phosphoglucomutase, alpha-D-glucose phosphate-specific [KO:K01835] [EC:5.4.2.2]
BTO20_07625  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
BTO20_34925  phosphogluconate dehydratase [KO:K01690] [EC:4.2.1.12]
BTO20_14480  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BTO20_34930  keto-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
BTO20_26070  theronine dehydrogenase [KO:K22969] [EC:1.1.1.47]
BTO20_17600  gluconate kinase [KO:K00851] [EC:2.7.1.12]
BTO20_14495  carbohydrate kinase [KO:K00874] [EC:2.7.1.45]
BTO20_30240  2-dehydro-3-deoxygluconokinase [KO:K00874] [EC:2.7.1.45]
BTO20_16280  fructose bisphosphate aldolase [KO:K01623] [EC:4.1.2.13]
BTO20_32245  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BTO20_03385  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
BTO20_08295  fructose-bisphosphatase class II [KO:K02446] [EC:3.1.3.11]
BTO20_23555  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
BTO20_03420  6-phosphofructokinase [KO:K21071] [EC:2.7.1.11 2.7.1.90]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
mdx00010  Glycolysis / Gluconeogenesis
mdx00040  Pentose and glucuronate interconversions
mdx00052  Galactose metabolism
mdx00230  Purine metabolism
mdx00240  Pyrimidine metabolism
mdx00340  Histidine metabolism
mdx00630  Glyoxylate and dicarboxylate metabolism
mdx00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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