KEGG   PATHWAY: meku00020
Entry
meku00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Metabacillus sp. KUDC1714
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
meku00020  Citrate cycle (TCA cycle)
meku00020

Module
meku_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:meku00020]
meku_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:meku00020]
meku_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:meku00020]
meku_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:meku00020]
meku_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:meku00020]
Other DBs
GO: 0006099
Organism
Metabacillus sp. KUDC1714 [GN:meku]
Gene
HUW50_02180  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
HUW50_21030  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HUW50_02175  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HUW50_25480  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HUW50_25475  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HUW50_18940  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUW50_00170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HUW50_20185  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HUW50_20190  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HUW50_19725  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HUW50_19720  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HUW50_01935  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HUW50_01930  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HUW50_01940  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
HUW50_11800  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HUW50_05055  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HUW50_02170  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HUW50_21415  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
HUW50_19055  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HUW50_02780  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HUW50_18925  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
HUW50_18930  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
HUW50_18935  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
meku00010  Glycolysis / Gluconeogenesis
meku00053  Ascorbate and aldarate metabolism
meku00061  Fatty acid biosynthesis
meku00071  Fatty acid degradation
meku00190  Oxidative phosphorylation
meku00220  Arginine biosynthesis
meku00250  Alanine, aspartate and glutamate metabolism
meku00280  Valine, leucine and isoleucine degradation
meku00350  Tyrosine metabolism
meku00470  D-Amino acid metabolism
meku00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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