KEGG   PATHWAY: memj00020
Entry
memj00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Metallosphaera sedula MJ1HA
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
memj00020  Citrate cycle (TCA cycle)
memj00020

Module
memj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:memj00020]
memj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:memj00020]
memj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:memj00020]
memj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:memj00020]
memj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:memj00020]
Other DBs
GO: 0006099
Organism
Metallosphaera sedula MJ1HA [GN:memj]
Gene
MJ1HA_0368  citrate synthase [KO:K01647] [EC:2.3.3.1]
MJ1HA_1738  citrate synthase [KO:K01659] [EC:2.3.3.5]
MJ1HA_1681  isopropylmalate/citramalate isomerase large subunit [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MJ1HA_0813  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MJ1HA_1219  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJ1HA_1768  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJ1HA_2239  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJ1HA_2277  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MJ1HA_0631  2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MJ1HA_0630  2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MJ1HA_1799  succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
MJ1HA_1800  succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
MJ1HA_1379  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
MJ1HA_0787  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MJ1HA_1243  fumarate reductase (CoM/CoB) subunit A [KO:K00239] [EC:1.3.5.1]
MJ1HA_0786  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
MJ1HA_1240  fumarate reductase (CoM/CoB) subunit B [KO:K00240] [EC:1.3.5.1]
MJ1HA_0785  succinate dehydrogenase subunit C [KO:K00241]
MJ1HA_1242  fumarate reductase cytochrome b-556 subunit [KO:K00241]
MJ1HA_1241  fumarate reductase membrane anchor subunit FrdC [KO:K00242]
MJ1HA_0784  succinate dehydrogenase subunit D [KO:K18859]
MJ1HA_1245  fumarate hydratase class I, alpha region [KO:K01677] [EC:4.2.1.2]
MJ1HA_1244  fumarate hydratase class I, beta region [KO:K01678] [EC:4.2.1.2]
MJ1HA_1675  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MJ1HA_0551  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MJ1HA_1665  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
MJ1HA_0397  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MJ1HA_0613  pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
MJ1HA_1359  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
MJ1HA_0398  pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MJ1HA_0614  pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
MJ1HA_1358  pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
MJ1HA_0395  pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
MJ1HA_0611  pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
MJ1HA_0396  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
MJ1HA_0612  pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
MJ1HA_1360  pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
memj00010  Glycolysis / Gluconeogenesis
memj00061  Fatty acid biosynthesis
memj00071  Fatty acid degradation
memj00190  Oxidative phosphorylation
memj00220  Arginine biosynthesis
memj00250  Alanine, aspartate and glutamate metabolism
memj00280  Valine, leucine and isoleucine degradation
memj00350  Tyrosine metabolism
memj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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