KEGG   PATHWAY: menm00020
Entry
menm00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Megaira endosymbiont of Mesostigma viride
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
menm00020  Citrate cycle (TCA cycle)
menm00020

Module
menm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:menm00020]
menm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:menm00020]
menm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:menm00020]
menm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:menm00020]
Other DBs
GO: 0006099
Organism
Candidatus Megaira endosymbiont of Mesostigma viride [GN:menm]
Gene
LF888_04480  citrate synthase [KO:K01647] [EC:2.3.3.1]
LF888_01565  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LF888_01520  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LF888_06315  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LF888_06320  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LF888_01170  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LF888_02520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LF888_03425  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LF888_03420  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LF888_00600  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LF888_01465  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LF888_01470  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LF888_01180  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LF888_04305  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LF888_01155  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LF888_01160  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LF888_01165  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
menm00010  Glycolysis / Gluconeogenesis
menm00061  Fatty acid biosynthesis
menm00071  Fatty acid degradation
menm00190  Oxidative phosphorylation
menm00220  Arginine biosynthesis
menm00250  Alanine, aspartate and glutamate metabolism
menm00280  Valine, leucine and isoleucine degradation
menm00350  Tyrosine metabolism
menm00470  D-Amino acid metabolism
menm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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