KEGG   PATHWAY: mepi00020
Entry
mepi00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Macrococcus epidermidis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mepi00020  Citrate cycle (TCA cycle)
mepi00020

Module
mepi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mepi00020]
mepi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mepi00020]
mepi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mepi00020]
mepi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mepi00020]
mepi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mepi00020]
Other DBs
GO: 0006099
Organism
Macrococcus epidermidis [GN:mepi]
Gene
KFV12_09255  citrate synthase [KO:K01647] [EC:2.3.3.1]
KFV12_06605  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KFV12_09250  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KFV12_07305  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KFV12_07300  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KFV12_02380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KFV12_05100  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KFV12_06225  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KFV12_06230  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KFV12_05980  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KFV12_05975  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KFV12_08955  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KFV12_08950  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KFV12_08960  succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
KFV12_10360  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KFV12_09245  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KFV12_03180  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
KFV12_05185  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KFV12_10070  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KFV12_05085  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KFV12_05090  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KFV12_02395  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KFV12_05095  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mepi00010  Glycolysis / Gluconeogenesis
mepi00061  Fatty acid biosynthesis
mepi00071  Fatty acid degradation
mepi00190  Oxidative phosphorylation
mepi00220  Arginine biosynthesis
mepi00250  Alanine, aspartate and glutamate metabolism
mepi00280  Valine, leucine and isoleucine degradation
mepi00350  Tyrosine metabolism
mepi00470  D-Amino acid metabolism
mepi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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