KEGG   PATHWAY: mes00020
Entry
mes00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chelativorans sp. BNC1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mes00020  Citrate cycle (TCA cycle)
mes00020

Module
mes_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mes00020]
mes_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mes00020]
mes_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mes00020]
mes_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mes00020]
mes_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mes00020]
Other DBs
GO: 0006099
Organism
Chelativorans sp. BNC1 [GN:mes]
Gene
Meso_1646  citrate synthase [KO:K01647] [EC:2.3.3.1]
Meso_4477  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
Meso_2391  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Meso_3357  aconitase [KO:K01681] [EC:4.2.1.3]
Meso_1267  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Meso_3398  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Meso_3399  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
Meso_3400  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Meso_1626  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Meso_4269  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Meso_3397  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
Meso_3396  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
Meso_3244  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Meso_3243  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Meso_3246  succinate dehydrogenase subunit C [KO:K00241]
Meso_3245  succinate dehydrogenase subunit D [KO:K00242]
Meso_0056  fumarase [KO:K01676] [EC:4.2.1.2]
Meso_0355  fumarase [KO:K01679] [EC:4.2.1.2]
Meso_3621  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Meso_3395  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Meso_3329  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Meso_3502  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Meso_1630  dehydrogenase, E1 component [KO:K00161] [EC:1.2.4.1]
Meso_1629  Transketolase, central region [KO:K00162] [EC:1.2.4.1]
Meso_1628  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mes00010  Glycolysis / Gluconeogenesis
mes00053  Ascorbate and aldarate metabolism
mes00061  Fatty acid biosynthesis
mes00071  Fatty acid degradation
mes00190  Oxidative phosphorylation
mes00220  Arginine biosynthesis
mes00250  Alanine, aspartate and glutamate metabolism
mes00280  Valine, leucine and isoleucine degradation
mes00350  Tyrosine metabolism
mes00470  D-Amino acid metabolism
mes00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system