KEGG   PATHWAY: mesc00020
Entry
mesc00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Manihot esculenta (cassava)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mesc00020  Citrate cycle (TCA cycle)
mesc00020

Module
mesc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mesc00020]
mesc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mesc00020]
mesc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mesc00020]
mesc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mesc00020]
mesc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mesc00020]
Other DBs
GO: 0006099
Organism
Manihot esculenta (cassava) [GN:mesc]
Gene
110619403  citrate synthase, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
110609079  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
110600607  citrate synthase, glyoxysomal [KO:K01647] [EC:2.3.3.1]
110625172  citrate synthase, mitochondrial [KO:K01647] [EC:2.3.3.1]
110611918  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
110629042  ATP-citrate synthase alpha chain protein 1 isoform X2 [KO:K01648] [EC:2.3.3.8]
110622885  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
110602440  ATP-citrate synthase beta chain protein 2 [KO:K01648] [EC:2.3.3.8]
110627404  ATP-citrate synthase alpha chain protein 1 [KO:K01648] [EC:2.3.3.8]
110609582  aconitate hydratase 1 isoform X1 [KO:K01681] [EC:4.2.1.3]
110629776  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
110627474  aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
110611409  aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
110609596  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
110600065  isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
110604399  isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial [KO:K00031] [EC:1.1.1.42]
110602849  isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
110621233  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
110622325  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial [KO:K00030] [EC:1.1.1.41]
110628231  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110609226  isocitrate dehydrogenase [NAD] regulatory subunit 3, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
110625357  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
110624615  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
110619690  2-oxoglutarate dehydrogenase, mitochondrial [KO:K00164] [EC:1.2.4.2]
110611630  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X1 [KO:K00658] [EC:2.3.1.61]
110602201  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [KO:K00658] [EC:2.3.1.61]
110607904  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial isoform X1 [KO:K00658] [EC:2.3.1.61]
110611729  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
110602122  dihydrolipoyl dehydrogenase 2, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
110612238  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
110613798  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110626887  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
110627497  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110630174  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
110601213  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial [KO:K00234] [EC:1.3.5.1]
110610042  succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform X1 [KO:K00234] [EC:1.3.5.1]
110601215  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
110605541  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
110629240  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [KO:K00235] [EC:1.3.5.1]
42317502  sdh3; succinate dehydrogenase subunit 3 [KO:K00236]
42317507  sdh4; succinate dehydrogenase subunit 4 [KO:K25801]
110612874  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
110615993  fumarate hydratase 1, mitochondrial isoform X3 [KO:K01679] [EC:4.2.1.2]
110611434  fumarate hydratase 1, mitochondrial isoform X1 [KO:K01679] [EC:4.2.1.2]
110601852  malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
110616095  malate dehydrogenase isoform X1 [KO:K00025] [EC:1.1.1.37]
110616328  malate dehydrogenase, cytoplasmic isoform X1 [KO:K00025] [EC:1.1.1.37]
110629152  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
110612281  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
110618260  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
110599910  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
110611797  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110601163  malate dehydrogenase, mitochondrial [KO:K00026] [EC:1.1.1.37]
110630047  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
110618870  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
110628799  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
110630247  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
110606866  phosphoenolpyruvate carboxykinase (ATP) 1 [KO:K01610] [EC:4.1.1.49]
110614057  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
110615777  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
110615708  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic isoform X1 [KO:K00161] [EC:1.2.4.1]
110609304  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X2 [KO:K00161] [EC:1.2.4.1]
110605154  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
110621156  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
110602170  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [KO:K00162] [EC:1.2.4.1]
110623688  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
110608557  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
110599973  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [KO:K00627] [EC:2.3.1.12]
110625504  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
110624752  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
110613392  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [KO:K00627] [EC:2.3.1.12]
110606044  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mesc00010  Glycolysis / Gluconeogenesis
mesc00053  Ascorbate and aldarate metabolism
mesc00061  Fatty acid biosynthesis
mesc00062  Fatty acid elongation
mesc00071  Fatty acid degradation
mesc00190  Oxidative phosphorylation
mesc00220  Arginine biosynthesis
mesc00250  Alanine, aspartate and glutamate metabolism
mesc00280  Valine, leucine and isoleucine degradation
mesc00350  Tyrosine metabolism
mesc00470  D-Amino acid metabolism
mesc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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