KEGG   PATHWAY: mesw00020
Entry
mesw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mesorhizobium sp. WSM1497
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mesw00020  Citrate cycle (TCA cycle)
mesw00020

Module
mesw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mesw00020]
mesw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mesw00020]
mesw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mesw00020]
mesw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mesw00020]
mesw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mesw00020]
Other DBs
GO: 0006099
Organism
Mesorhizobium sp. WSM1497 [GN:mesw]
Gene
A9K65_022140  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A9K65_006845  citrate synthase [KO:K01647] [EC:2.3.3.1]
A9K65_006850  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
A9K65_005010  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A9K65_024200  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A9K65_005120  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A9K65_031185  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
A9K65_005125  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A9K65_005140  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9K65_004570  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9K65_019880  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A9K65_005115  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
A9K65_005105  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A9K65_005265  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A9K65_005270  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A9K65_005255  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
A9K65_005260  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
A9K65_030855  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A9K65_025590  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A9K65_005100  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A9K65_006385  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
A9K65_002355  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A9K65_019860  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A9K65_019865  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
A9K65_007515  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
A9K65_019870  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mesw00010  Glycolysis / Gluconeogenesis
mesw00053  Ascorbate and aldarate metabolism
mesw00061  Fatty acid biosynthesis
mesw00071  Fatty acid degradation
mesw00190  Oxidative phosphorylation
mesw00220  Arginine biosynthesis
mesw00250  Alanine, aspartate and glutamate metabolism
mesw00280  Valine, leucine and isoleucine degradation
mesw00350  Tyrosine metabolism
mesw00470  D-Amino acid metabolism
mesw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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