KEGG   PATHWAY: mfeu00020
Entry
mfeu00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Micromonospora ferruginea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mfeu00020  Citrate cycle (TCA cycle)
mfeu00020

Module
mfeu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mfeu00020]
mfeu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mfeu00020]
mfeu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mfeu00020]
mfeu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mfeu00020]
mfeu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mfeu00020]
Other DBs
GO: 0006099
Organism
Micromonospora ferruginea [GN:mfeu]
Gene
H1D33_09365  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
H1D33_19330  citrate synthase [KO:K01647] [EC:2.3.3.1]
H1D33_26920  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
H1D33_02305  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
H1D33_01605  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
H1D33_28575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
H1D33_09920  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
H1D33_09915  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
H1D33_02385  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
H1D33_02390  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
H1D33_02145  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H1D33_16780  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
H1D33_02150  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H1D33_16775  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
H1D33_16785  succinate dehydrogenase cytochrome b subunit [KO:K00241]
H1D33_05075  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
H1D33_05065  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
H1D33_02315  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
H1D33_10875  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
H1D33_29100  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
H1D33_13180  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
H1D33_28580  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mfeu00010  Glycolysis / Gluconeogenesis
mfeu00053  Ascorbate and aldarate metabolism
mfeu00061  Fatty acid biosynthesis
mfeu00071  Fatty acid degradation
mfeu00190  Oxidative phosphorylation
mfeu00220  Arginine biosynthesis
mfeu00250  Alanine, aspartate and glutamate metabolism
mfeu00280  Valine, leucine and isoleucine degradation
mfeu00350  Tyrosine metabolism
mfeu00470  D-Amino acid metabolism
mfeu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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