KEGG   PATHWAY: mfu03410
Entry
mfu03410                    Pathway                                
Name
Base excision repair - Corallococcus macrosporus HW-1
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
mfu03410  Base excision repair
mfu03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Corallococcus macrosporus HW-1 [GN:mfu]
Gene
LILAB_01580  endonuclease III [KO:K10773] [EC:3.2.2.- 4.2.99.18]
LILAB_14405  base excision DNA repair protein [KO:K10773] [EC:3.2.2.- 4.2.99.18]
LILAB_23515  endonuclease III [KO:K10773] [EC:3.2.2.- 4.2.99.18]
LILAB_05000  uracil-DNA glycosylase [KO:K03648] [EC:3.2.2.27]
LILAB_17680  A/G-specific adenine glycosylase [KO:K03575] [EC:3.2.2.31]
LILAB_14240  DNA-3-methyladenine glycosylase [KO:K03652] [EC:3.2.2.21]
LILAB_16610  formamidopyrimidine-DNA glycosylase [KO:K10563] [EC:3.2.2.23 4.2.99.18]
LILAB_00970  putative DNA-3-methyladenine glycosylase [KO:K01247] [EC:3.2.2.21]
LILAB_20740  putative ada regulatory protein [KO:K13529] [EC:3.2.2.21]
LILAB_19555  G/U mismatch-specific DNA glycosylase [KO:K03649] [EC:3.2.2.28]
LILAB_17930  uracil-DNA glycosylase [KO:K21929] [EC:3.2.2.27]
LILAB_25925  uracil-DNA glycosylase family protein [KO:K21929] [EC:3.2.2.27]
LILAB_30055  uracil-DNA glycosylase [KO:K21929] [EC:3.2.2.27]
LILAB_33895  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
LILAB_27950  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
LILAB_23270  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LILAB_31385  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
LILAB_35665  NAD-dependent DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
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