KEGG   PATHWAY: mgad00020
Entry
mgad00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Mycolicibacterium gadium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mgad00020  Citrate cycle (TCA cycle)
mgad00020

Module
mgad_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mgad00020]
mgad_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mgad00020]
mgad_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mgad00020]
mgad_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mgad00020]
mgad_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mgad00020]
Other DBs
GO: 0006099
Organism
Mycolicibacterium gadium [GN:mgad]
Gene
MGAD_34590  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
MGAD_34620  citA; putative citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
MGAD_11780  acnA; aconitate hydratase A [KO:K27802] [EC:4.2.1.3 4.2.1.99]
MGAD_26150  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
MGAD_54240  kgd; multifunctional 2-oxoglutarate metabolism enzyme [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
MGAD_48890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
MGAD_00470  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MGAD_00480  orB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MGAD_32910  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
MGAD_32920  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
MGAD_25970  sdhA_1; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MGAD_32200  hypothetical protein [KO:K00239] [EC:1.3.5.1]
MGAD_36390  succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
MGAD_45800  sdhA_2; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
MGAD_25980  sdhB; succinate dehydrogenase iron-sulphur protein subunit [KO:K00240] [EC:1.3.5.1]
MGAD_45790  fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
MGAD_25950  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
MGAD_25960  succinate dehydrogenase [KO:K00242]
MGAD_52340  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
MGAD_54190  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
MGAD_18010  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
MGAD_45340  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
MGAD_02990  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
MGAD_22510  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
MGAD_22520  acoB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
MGAD_04180  hypothetical protein [KO:K00627] [EC:2.3.1.12]
MGAD_22530  acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mgad00010  Glycolysis / Gluconeogenesis
mgad00053  Ascorbate and aldarate metabolism
mgad00061  Fatty acid biosynthesis
mgad00071  Fatty acid degradation
mgad00190  Oxidative phosphorylation
mgad00220  Arginine biosynthesis
mgad00250  Alanine, aspartate and glutamate metabolism
mgad00280  Valine, leucine and isoleucine degradation
mgad00350  Tyrosine metabolism
mgad00470  D-Amino acid metabolism
mgad00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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