KEGG   PATHWAY: mgel00020
Entry
mgel00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Rasiella rasia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mgel00020  Citrate cycle (TCA cycle)
mgel00020

Module
mgel_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mgel00020]
mgel_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mgel00020]
mgel_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mgel00020]
mgel_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mgel00020]
mgel_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mgel00020]
Other DBs
GO: 0006099
Organism
Rasiella rasia [GN:mgel]
Gene
G5B37_06380  citrate synthase [KO:K01647] [EC:2.3.3.1]
G5B37_04800  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
G5B37_14285  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
G5B37_08925  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
G5B37_05340  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
G5B37_08920  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
G5B37_12045  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
G5B37_02890  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5B37_04545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
G5B37_01875  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
G5B37_05040  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
G5B37_08510  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
G5B37_08505  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
G5B37_08515  succinate dehydrogenase cytochrome b subunit [KO:K00241]
G5B37_05080  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
G5B37_06175  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
G5B37_08015  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
G5B37_12385  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
G5B37_11880  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
G5B37_12390  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mgel00010  Glycolysis / Gluconeogenesis
mgel00053  Ascorbate and aldarate metabolism
mgel00061  Fatty acid biosynthesis
mgel00071  Fatty acid degradation
mgel00190  Oxidative phosphorylation
mgel00220  Arginine biosynthesis
mgel00250  Alanine, aspartate and glutamate metabolism
mgel00280  Valine, leucine and isoleucine degradation
mgel00350  Tyrosine metabolism
mgel00470  D-Amino acid metabolism
mgel00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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